G, Pangga I, Ash GH. 2013. Standardizing resistance screening to Pseudomonas fuscovaginae and evaluaon of rice germplasm at seedling and adult plant growth stages. Euphyca 192(1):1-16. Agacka M, Depta A, Borner M, Doroszewska T, Hay FR, Borner A. 2013. Viability of Nicoanaspp. seeds stored under ambient temperature. Seed Sci. Technol. 41:474-478. Agrawal GK, Sarkar A, Righe PG, Pedreschi R, Carpener S, Wang T, Barkla BJ, Kohli A, Ndimba BK, Bykova N, Rampitsch C, Zolla L, Rafudeen MS, Cramer R, Bindschedler LV, Tsakirpaloglou N, Ndimba RJ, Farrant JM, Renaut J, Job D, Kikuchi S, Rakwal R. 2013. A decade of plant proteomics and mass spectrometry: translaon of technical advancements to food security and safety issues. Mass Spectrom. Rev. 32:335-365. Ahmadi N, Bouman B. 2013. Rice and rice elds, economic, ecological and scienc issues. Cah. Agric. 22(5):333-335. Alam MM, Karim MR, Ladha JK. 2013. Integrang best management pracces for rice with farmers crop management techniques: a potenal opon for minimizing rice yield gap. Field Crops Res. 144:62-68. Alberto MCR, Buresh RJ, Hirano T, Miyata A, Wassmann R, Quilty JR, Correa TQ Jr., Sandro J. 2013. Carbon uptake and water producvity for dry-seeded rice and hybrid maize grown with overhead sprinkler irrigaon. Field Crops Res. 146:51-65. Alberts B, Beachy R, Baulcombe D, Blobel G, Daa S, Fedoro N, Kennedy D, Khush GS, Peacock J, Rees M, Sharp P. 2013. Standing up for GMOs. Science 341:1320. Ali S, Gautam RK, Mahajan R, Krishnamurthy SL, Sharma SK, Singh RK, Ismail AM. 2013. Stress indices and selectable traits in SALTOL QTL introgressed rice genotypes for reproducve stage tolerance to sodicity and salinity stresses. Field Crops Res. 154:65-73. Banaay CGB, Vera Cruz CM, Cuevas VC. 2013. Responses and adaptaon by Nephotex virescens to monogenic and pyramided rice lines with Grh-resistance genes. Phillip. Sci. Le. 6(1): 107-118, 2013. Banacla-Hilario MCN, McNally KL, van den Berg RG, Hamilton NRS. 2013. Crossability paerns within and among Oryza series Savae species from Asia and Australia. Genet. Resour. Crop Evol. 60:1899-1914. Banacla-Hilario MCN, Sosef MSM, McNally KL, Hamilton NRS, van den Berg RG. 2013. Ecogeographic variaon in the morphology of two Asian wild rice species, Oryzanivara and Oryzarupogon. Int. J. Plant Sci. 174(6):896-909. Banacla-Hilario MCN, van den Berg RG, Hamilton NRS, McNally KL. 2013. Local dierenaon amidst extensive allele sharing in Oryzanivara and O.rupogon. Ecol. Evol. 3(9):3047-3062. Balagtas J, Bhandari H, Mohanty S, Cabrera E, Hossain M. 2013. Did the commodity price spike increase rural poverty? Evidence from a long-run panel in Bangladesh. Ag. Econ. 45:1-10. Bandillo N, Raghavan C, Muyco PA, Sevilla Ma. AL, Lobina I, Dilla-Ermita CJ, Tung CW, McCouch S, Thomson M, Mauleon R, Singh RK, Gregorio G, Redona E, Leung H. 2013. Mul-parent advanced generaon inter- cross (MAGIC) populaons in rice: progress IRRI scientic publications for 2013 2 IRRI scientic publications for 2013 and potenal for genecs research and breeding. Rice 6(11):1-15. Barnwal MK, Kotasthane A, Mageulia N, Mukherjee PK, Savary S, Sharma AK, Singh HB, Singh US, Sparks AH, Variar M, Zaidi N. 2013. A review on crop losses, epidemiology and disease management of rice brown spot to idenfy research priories and knowledge gaps. Eur. J. Plant Pathol. 136:443-457. Bhadauria BP, Singh PK, Pandey S, Zaidi NW, Singh US. 2013. Characterizaon and biocontrol potenal of entomopathogenic fungus, Beauveria bassiana isolates against Spilarcaobliqua. J. Environ. Biol. 34:917- 921. Biswal AK, Kohli A. 2013. Cereal ag leaf adaptaons for grain yield under drought: knowledge status and gaps. Mol. Breed. 31(4):749-766. Biswal AK. 2013. An absolute index (Ab-index) to measure a researchers useful contribuons and producvity. PLOS One 8(12):1-10. Boopathi NM, Swapnashri G, Kavitha P, Sathish S, Nithya R, Ratnam W, Kumar A. 2013. Evaluaon and bulked segregant analysis of major yield QTL qtl 12.1 introgressed into indigenous elite line for low water availability under water stress. Rice Sci. 20(1):25-30. Bossa-Castro AM, Raghavan C, Vera Cruz CM, Leung H, Mosquera GM, Verdier V, Leach JE. 2013. Idenfying novel bacterial disease resistance sources for rice. Phytopathology 103(6/S2):19. Boyd LA, Ridout C, OSullivan DM, Leach JE, Leung H. 2013. Plant-pathogen interacons: disease resistance in modern agriculture. Trends Genet. 29(4):233-240. Bravo A, Ponce L, Prraga P, Oliva RF, Proao K. 2013. Expression of high molecular weight glutenin subunit genes correlated with gluten content in common wheat variees from the highland of Ecuador. Cereal Res. Commun. 41(4): 593-600. Burgos MRG, Kambang MLB, Dela Paz MAG, Beligan GA, Goodwin PH, Ona IP, Mauleon RP, Ardales EY, Vera Cruz CM. 2013. Genotypic variability and aggressiveness of Bipolarisoryzae in the Philippines. Eur. J. Plant Pathol. 137:415-429. Buar GS, Sidhu HS, Singh V, Jats ML, Gupta R, Yadvinder-Singh, Singh B. 2013. Relay planng of wheat in coon: an innovave technology for enhancing producvity and protability of wheat in coon-wheat producon system of South Asia. Exp. Agric. 49(1):19-30. Cal AJ, Liu DC, Mauleon R, Hsing YIC, Serraj R. 2013. Transcriptome proling of leaf elongaon zone under drought in contrasng rice culvars. PLOS One 8(1):E54537. Chai L, Zhang J, Pan XB, Zhang F, Zheng TQ, Zhao XQ, Wang WS, Ali J, Xu JL, Li ZK. 2013. Advanced backcross QTL analysis for the whole plant growth duraon salt tolerance in rice (Oryzasava L.). J. Integr. Agric. 2013(e-First):18. Chauhan BS. 2013. Growth response of itchgrass (Ro boelliacochinchinensis) to water stress. Weed Sci. 61: 98-103. Chauhan BS. 2013. Shade reduces growth and seed producon of Echinochloacolona, Echinochloacrus-galli, and Echinochloa glabrescens. Crop Prot. 43:241-245. Chauhan BS. 2013. Strategies to manage weedy rice in Asia. Crop Prot. 48:51-56. 3 Annual Report 2013 IRRI scientic publications for 2013 Chauhan BS. 2013. Phenotypic plascity of blistering Ammannia (Ammanniabaccifera) in compeon with direct-seeded rice. Weed Technol. 27(2):373-377. Chauhan BS. 2013. Eect of llage systems, seeding rates, and herbicides on weed growth and grain yield in dry-seeded rice systems in the Philippines. Crop Prot. 54:244-250. Chauhan BS. 2013. Seed germinaon ecology of feather lovegrass [Eragrosstenella (L.)] Beauv. Ex Roemer & JA Schultes]. PLOS One 8(11):1-6. Chauhan BS, Abeysekara ASK, Kulatunga SD, Madusanka IU. 2013. Weed growth and grain yield, as aected by herbicides, in dry-seeded rice in Sri Lanka. J. Crop Improv. 27(4):419-4429. Chauhan BS, Abeysekara ASK, Kulatunga SD, Wickrama UB. 2013. Performance of dierent herbicides in a dry-seeded rice system in Sri Lanka. Weed Technol. 27:459- 462. Chauhan BS, Abugho SB. 2013. Weed management in mechanized-sown, zero-ll dry-seeded Rice. Weed Technol. 27(1):28- 33. Chauhan BS, Abugho SB. 2013. Eect of crop residue on seedling emergence and growth of selected weed species in a sprinkler- irrigated zero-ll dry-seeded rice system. Weed Sci. 61(3):403-409. Chauhan BS, Abugho SB. 2013. Growth of Echinochloaglabrescens in response to rice culvar and density. J. Crop Improv. 27(4):419-4429. Chauhan BS, Abugho SB. 2013. Eects of water regime, nitrogen ferlizaon, and rice plant density on growth and reproducon of lowland weed Echinochloacrus-galli. Crop Prot. 54:142-147. Chauhan BS, Abugho SB, Amas JC, Gregorio GB. 2013. Eect of salinity on growth of Barnyardgrass (Echinochloacrus- galli), Horse Purslane (Trianthema portulacastrum), Junglerice (Echinochloa colona), and rice. Weed Sci. 61(2):244-248. Chauhan BS, Opena JL. 2013. Weed management and grain yield of rice sown at low seeding rates in mechanized dry-seeded systems. Field Crops Res. 141:9-15. Chauhan BS, Opena JL. 2013. Implicaons of plant geometry and weed control opons in designing a low-seeding seed-drill for dry-seeded rice systems. Field Crops Res. 144:225-231. .Chen S, Zheng X, Wang DY, Xu CM, Laza MRC, Zhang XF. 2013. The chamber for studying rice response to elevated nigh me temperature in eld. Sci. World J. 2013:647897. Cheng L, Xu Q, Zheng T, Ye G, Luo C, Xu JL, Li ZK. 2013. Idencaon of stably expressed quantave trait loci for grain yield and protein content using recombinant inbred line and reciprocal introgression line populaons. Crop Sci. 53(4):1437-1446. Clerget B. 2013. The eect of aerobic soil condions, soil volume and sowing date on the development of four tropical rice variees grown in the greenhouse. Funct. Plant Biol. 40:79-88. Clerget B, Bueno C, Quilty JR, Correa TQ Jr., Sandro J. 2013. Modicaons in development and growth of a dual-adapted tropical rice variety grown as either a ooded or an aerobic crop. Field Crops Res. 155:134-143. 4 IRRI scientic publications for 2013 Collard BCY, Sepningsih EM, Das SR, Carandang JJ, Pamplona AM, Sanchez DL, Kato Y, Ye G, Reddy JN, Singh US, Iekharuddaula KM, Venuprasad R. Vera-Cruz CN, Mackill DJ, Ismail AM. 2013. Developing new ood- tolerant variees at the Internaonal Rice Research Instute (IRRI). SABRAO J. Breed. Genet. 45(1):42-56. Craufurd PQ, Vadez V, Jagadish SVK, Prasad PVV, Zaman-Allah M. 2013. Crop science experiments designed to inform crop modeling. Agric. Forest Meteorol. 170:8-18. Crawford AD, Hay FR, Plummer JA, Probert RJ, Steadman KJ. 2013. One-step ng of seed viability constants for two Australian plant species, Eucalyptuserythrocorys (Myrtaceae) and Xanthorrhoeapreissii (Xanthorrhoeacea). Aust. J. Bot. 61(1):1-10. Crisol E, Almazan MLP, Jones PW, Horgan FG. 2013. Planthopper-rice interacons: unequal stresses on pure-line and hybrid rice under similar experimental condions. Entomol. Exp. Appl. 147:18-31. Dar MH, de Janvry A, Emerick K, Raitzer D, Sadoulet E. 2013. Flood-tolerant rice reduces yield variability and raises expected yield, dierenally bene ng socially disadvantaged groups. Sci. Rep. 3(3315):1-8. De Waele D, Das K, Zhao D, Tiwari RKS, Shrivastava DK, Vera-Cruz C, Kumar A. 2013. Host response of rice genotypes to the rice root-knot nematode (Meloidogyne graminicola) under aerobic soil condions. Arch. Phytopathol. Plant Prot. 46(6):670- 681. Demont M, Ndour M, Zossou E. 2013. Can local African rice be compeve? An analysis of quality-based compeveness through experimental aucons. Cah. Agric. 22(5):345-352. Demont M, Stein AJ. 2013. Global value of GM rice: a review of expected agronomic and consumer benets. New Biotechnol. 30(5):426-436. Demont M. 2013. Reversing urban bias in African rice markets: a review of 19 naonal rice development strategies. Glob. Food Security 2:172-181. Deswal R, Gupta R, Dogra V, Singh R, Abat JK, Sarkar A, Mishra Y, Rai V, Sreenivasulu Y, Amalraj RS, Raorane M, Chaudhary RP, Kohli A, Giri AP, Chakraborty N, Zargar SM, Agrawal VP, Agrawal GK, Job D, Renaut J, Rakwal R. 2013. Plant proteomics in India and Nepal: current status and challenges ahead. Physiol. Mol. Biol. Plant 19(4):461- 477. Devkota KP, Manschadi AM, Lamers JPA, Humphreys E, Devkota M, Egamberdiev O, Gupta RK, Sayre KD, Vlek PLG. 2013. Growth and yield of rice (OryzasavaL.) under resource conservaon technologies in the irrigated drylands of Central Asia. Field Crops Res. 149:115-126. Diaz CI, Ponce K, Oliva R, Garazon C, Koch AR, Benitez MS. 2013. Microbial communies associated with the suppression of tuber blight infecon in soils from Chimborazo Province, Ecuador. Phytopathology 103(6/ S2):35. Duan CF, Argout X, Gebelin V, Summo M, Dufayard JF, Leclercq J, Kuswanhadi., Piyatrakul P, Pirrello J, Rio M, Champion A, Montoro,P. 2013. Idencaon of the Hevea brasiliensis AP2/ERF superfamily by RNA sequencing. BMC Genomics 14(30):1-22. Elec V, Quimio CA, Mendoza R, Sajise AGC, Beebout SEJ, Gregorio GB, Singh RK. 2013. Maintaining elevated Fe2+ concentraon in soluon culture for the development of a rapid and repeatable screening technique 5 Annual Report 2013 IRRI scientic publications for 2013 for iron toxicity tolerance in rice (Oryza savaL.). Plant Soil 372(1):253-264. Feng BH, Yang Y, Shi YF, Lin L, Chen J, Wei YL, Hei L, Wu JL. 2013. Genec analysis and gene mapping of light brown spoed leaf mutant in rice. Rice Sci. 20(1):13-18. Fernandez L, Cabasan MTN, Waele D De, Oikawa S. 2013. Life cycle of the rice root-knot nematode Meloidogyne graminicola at dierent temperatures under non-ooded and ooded condions. Arch. Phytopathol. Plant Prot. DOI: 10.1080/03235408.2013.829627. Ferrater JB, de Jong PW, Dicke M, Chen YH, Horgan FB. 2013. Symbiont-mediated adaptaon by planthoppers and leaoppers to resistant rice variees. Arthropod-Plant Interact. 7:591-605. Fujita D, Kohli A, Horgan FG. 2013. Rice resistance to planthoppers and leaoppers. Crit. Rev. Plant Sci. 32(3):162-191. Fujita D, Trijatmiko K, Tagle AG, Sapasap MV, Koide Y, Sasaki K, Tsakirpaloglou N, Gannaban RB, Nishimura T, Yanagihara S, Fukuta Y, Koshiba T, Slamet-Loedin IH, Ishimaru T, Kobayashi N. 2013. NAL1 allele from a rice landrace greatly increases yield in modern indica culvars. Proc. Natl. Acad. Sci. USA 110(51):20431-20436. Gaihre YK, Wassmann R, Villegas-Pangga G. 2013. Impact of elevated temperatures on greenhouse Gas emissions in rice systems: interacon with straw incorporaon studied in a growth chamber experiment. Plant Soil 373:857-875. Gathala MK, Kumar V, Sharma PC, Saharawat YS. Jat SH, Singh M, Kumar A, Jat ML, Humphreys E, Sharma DK, Sharma S, Ladha JK. 2013. Opmizing intensive cereal-based cropping systems addressing current and future drivers of agricultural change in the Northwestern Indo-Gangec Plains of India. Agric. Ecosyst. Environ. 177:85-97. Gaudin ACM, Henry A, Sparks AH, Slamet-Loedin IH. 2013. Taking transgenic rice drought screening to the eld. J. Exp. Bot. 64(1):109- 117. Gebelin V, Leclercq J, Kuswanhadi, Argout X, Chaidamsari T, Hu SN, Tang CR, Sarah G, Yang M, Montoro P. 2013. The small RNA prole in latex from Heveabrasiliensis trees is aected by tapping panel dryness. Tree Physiol. 31:1084-1098. Ghatak A. 2013. Variability in aggressiveness of rice blast (Magnaportheoryzae) isolates originang from rice leaves and necks: a case of pathogen specializaon? PLOS One 8(6):1-7. Giuliani R, Koteyeva N, Voznesenskaya E, Evans MA, Cousins AB, Edwards GE. 2013. Coordinaon of leaf photosynthesis, transpiraon, and structural traits in rice and wild relaves (Genus oryza). Plant Physiol. 162(3):1632-1651. Gouda PK, Saikumar S, Varma CMK, Nagesh K, Thippeswamy S, Shenoy V, Ramesha MS, Shashidhar HE. 2013. Marker-assisted breeding of Pi-1 and Piz-5 genes imparng resistance to rice blast in PRR78, restorer line of pusa RH-10 Basma rice hybrid. Plant Breed. 132 (1):61-69. Gregorio GB, Islam MR, Vergara GV, Thirumeni S. 2013. Recent advances in rice science to design salinity and other abioc stress tolerant rice variees. SABRAO J. Breed. Genet. 45(1): 31-41. Gumma MK, Pavelic P. 2013. Mapping of groundwater potenal zones across Ghana using remote sensing, geographic informaon systems, and spaal modeling. Environ. Monit. Assess. 185:3561-3579. 6 IRRI scientic publications for 2013 Gutjahr S, Vaksmann M, Dingkuhn M, Thera K, Trouche G, Braconnier S, Luquet D. 2013. Grain, sugar and biomass accumulaon in tropical sorghums. I. trade-os and eects of phenological plascity. Funct. Plant Biol. 40:342-354. Haefele SM, Banayo NPM, Amarante ST, Siopongco JDLC, Mabesa RL. 2013. Characteriscs and management opons for rice-maize systems in the Philippines. Field Crops Res. 144:281-287. Hasnain Z, Ali H. 2013. Kernel quality and morphological traits of scented rice (Cv. Super Basma) in relaon to irrigaon and zinc applicaon. Mol. Breed. 31:981-985. Hay FR, de Guzman F, Ellis D, Makahiya H, Borromeo T, Hamilton NRS. 2013. Viability of Oryzasava L. seeds stored under genebank condions for up to 30 years. Genet. Resources Crop Evol. 60:275-296. Hay FR, Probert RJ. 2013. Advances in seed conservaon of wild plant species: a review of recent research. Conserv. Physiol. 1:1-11. Hay FR, Timple S. 2013. Opmum raos of zeolite seed drying beads to dry rice seeds for genebank storage. Seed Sci. Technol. 41:407-419. Heong KL, Chien HV, Escalada MM, Trebuil G. 2013. Reducing inseccide use in Southeast Asian irrigated rice elds: from experimental ecology to large scale change in pracces. Cah. Agric. 22(5):378-384. Hoekenaga OA, Srinivasan J, Barry G, Bartholomaeus A. 2013. Composional analysis of genecally modied (GM) crops: key issues and future needs. J. Agric. Food Chem. 61(35):8248-8253. Horgan FG, Crisol E. 2013. Hybrid rice and insect herbivores in Asia. Entomol. Exp. Appl. 148:1-19. Horgan F, Quiring DQ, Lagnaoui A, Pelleer Y. 2013. Tuber producon, dormancy and resistance against Phthorimaea operculella (Zeller) in wild potato species. J. App. Ent. 137:739-750. Htwe NM, Singleton GR, Nelson AD. 2013. Can rodent outbreaks be driven by major climac events? Evidence from cyclone Nargis in the Ayeyarwady Delta, Myanmar. Pest Manage. Sci. 69:378-385. Impa SM, Morete MJ, Ismai AMl, R Schullin R, Johnson-Beebout SE. 2013. Zn uptake, translocaon and grain Zn loading in rice (Oryzasava L.) genotypes selected for Zn deciency tolerance and high grain Zn. J. Exp. Bot. 64(10):2739-2751. Impa SM, A. Gramlich, S. Tandy, R. Schulin, E. Frossard, and S.E.Johnson-Beebout. Internal Zn allocaon inuences Zn deciency tolerance and grain Zn loading in rice (Oryza sava L.). Front. Plant Sci. 4(534):1-10. Ismail AM, Singh US, Singh S, Dar MH, Mackill DJ. 2013. The contribuon of submergence- tolerant (Sub1) rice variees to food security in ood-prone rainfed lowland areas in Asia. Field Crops Res. 152(1):83-93. Islam MR, Gregorio GB. 2013. Progress of salinity tolerant rice variety development in Bangladesh. SABRAO J. Breed. Genet. 45(1): 21-30. Jagadish KSV, Craufurd P, Shi WJ, Oane R. 2013. A phenotypic marker for quanfying heat stress impact during microsporogenesis in rice (Oryzasava L.). Funct. Plant Biol. 41(1):48-55. Jolivet P, Acevedo F, Boulard C, dAndrea S, Faure JD, Kohli A, Nesi N, Valot B, Chardot T. 2013. Crop seed oil bodies: from challenges in protein idencaon to an emerging picture of the oil body proteome. Proteomics 13:1836-1849. 7 Annual Report 2013 IRRI scientic publications for 2013 Julia C, Dingkuhn M. 2013. Predicng temperature induced sterility of rice spikelets requires simulaon of crop- generated microclimate. Eur. J. Agron. 49:50-60. Kano-Nakata M, Gowda VRP, Henry A, Serraj R, Inukai Y, Fujita D, Kobayashi N, Suralta RR, Yamauchi A. 2013. Funconal roles of the plascity of root system development in biomass producon and water uptake under rainfed lowland condions. Field Crops Res. 144:288-296. Karki S, Rizal G, Quick WP. 2013. Selecvity and weed control e cacy of pre- and post- emergence applicaons of clomazone in Southern Brazil. Rice 6(28):1-8. Karki S, Rizal G, Quick WP. 2013. Improvement of photosynthesis in rice (Oryzasava L.) by inserng the C 4 pathway. Rice 6(28):1-8. Kasetsomboon T, Kate-Ngam S, Sriwongcha T, Zhou B, Jantasuriyarat C. 2013. Sequence Variaon of avirulence gene AVR-pita1 in rice blast fungus, Magnaportheoryzae. Mycol. Prog. 12:617-628. Kijoji AA, Nchimbi-Msolla S, Kanyeka ZL, Klassen SP, Serraj R, Henry A. 2013. Water extracon and root traits in Oryzasava Oryza glaberrima introgression lines under dierent soil moisture regimes. Funct. Plant Biol. 40:54-66. Kohli A, Sreenivasulu N, Lakshmanan P, Kumar PP. 2013. The phytohormone crosstalk paradigm takes center stage in understanding how plants respond to abioc stresses. Plant Cell Rep. 32:945-957. Koide Y, Fujita D, Tagle AG, Sasaki K, Ishimaru T, Fukuta Y, Kobayashi N. 2013. QTL for spikelet number from a high-yielding rice variety, Hoshiaoba, detected in an introgression line with the genec background of an Indica rice variety, IR64. Euphyca 192(1):97-106. Koide Y, Telebanco-Yanoria MJ, Fukuta Y, Kobayashi N. 2013. Detecon of novel blast resistance genes, Pi58(t) and Pi59(t), in a Myanmar rice landrace based on a standard dierenal system. Mol. Breed. 32:241-252. Koppolu R, Anwar N, Sakuma S, Tagiri A, Lundqvist U, Pourkheirandish M, Ruen T, Seiler C, Himmelbach A, Ariyadasa R, Youssef HM, Stein N, Sreenivasulu N, Komatsuda T, Schnurbusch T. 2013. Six- rowed spike4 (Vrs4) controls spikelet determinacy and row-type in barley. Proc. Natl. Acad. Sci. USA 110(32):13198-13203. Kra nger SG, Jordan DR, Mace ES, Raghavan C, Luo MC, Keller B, Lagudah ES. 2013. Recent emergence of the wheat Lr34 mul-pathogen resistance: insights from haplotype analysis in wheat, rice, sorghum and aegilops tauschii. Theor. Appl. Genet. 126(3):663-672. Kumar V, Saharawat YS, Gathala MK, Jat AS, Singh SK, Chaudhary N, Jat ML. 2013. Eect of dierent llage and seeding methods on energy use e ciency and producvity of wheat in the Indo-Gangec plains. Field Crops Res. 142:1-8. Kumar V, Singh S, Chhokar RS, Malik RK, Brainard DC, Ladha JK. 2013. Weed management strategies to reduce herbicide use in zero-ll rice-wheat cropping systems of the Indo- Gangec Plains. Weed Technol. 27(1):241- 254. Lang JM, Langlois P, Nguyen H, Vera Cruz CM, Purdie L, Holton T, Djikeng A, Verdier V, Leach JE. 2013. Detecon of Xanthomonas oryzae by loop-mediated isothermal amplicaon. Phytopathol. 103(6/S2):76. Li T, Raman AK, Marcaida III M, Kumar A, Angeles O. 2013. Simulaon of genotype performances across a larger number of environments for rice breeding using ORYZA2000. Field Crops Res. 149:312-321. 8 IRRI scientic publications for 2013 Liang XQ, Chen YX, Nie ZY, Ye YS, Liui J, Tian GM, Wang GH, Tuong TP. 2013. Migaon of nutrient losses via surface runo from rice cropping systems with alternate we ng and drying irrigaon and site-specic nutrient management pracces. Environ. Sci. Pollut. Res. 20(10):6980-6991. Liu Y, Liu B, Zhu XY, Yang JY, Bordeos A, Wang GL, Leach JE, Leung H. 2013. Fine-mapping and molecular marker development for Pi56(t), a NBS-LRR gene conferring broad-spectrum resistance to Magnaportheoryzae in rice. Theor. Appl. Genet. 126:985-998. Lyman NB, Jagadish KSV, Nalley LL, Dixon BL, Siebenmorgen T. 2013. Neglecng rice milling yield and quality underesmates economic losses from high-temperature stress. PLOS One 8(8):1-9. Mabesa RL, Impa SM, Grewal D, Johnson- Beebout SE. 2013. Contrasng grain-Zn response of bioforcaon rice (Oryza sava L.) breeding lines to foliar Zn applicaon. Field Crops Res. 149:223-233. Mahajan G, Chauhan BS. 2013. The role of culvars in managing weeds in dry-seeded rice producon systems. Crop Prot. 49:52- 57. Mahajan G, Chauhan BS. 2013. Herbicide opons for weed control in dry-seeded aromac rice in India. Weed Technol. 27:682-689. Mahajan G, Chauhan BS, Gill MS. 2013. Dry- seeded rice culture in Punjab State of India: lessons learned from farmers. Field Crops Res. 144:89-99. Manosalva PM, Tonnessen BW, Lang JM, Baraoidan M, Bordeos A, Leung H, Leach JE. 2013. Rice Phenylalanine Ammonia Lyase 4 gene (OsPAL4) is associated with broad spectrum disease resistance. Phytopathology 103(6/S2):89. Manzanilla DO, Paris TR, Tatlonghari GT, Tobias AM, Chi TTN, Phuong NT, Siliphouthone I, Chamarerk V, Bhekasut P, Gandasoemita R. 2013. Social and gender perspecves in rice breeding for submergence tolerance in Southeast Asia. Exp. Agric. FirstView Arcle pp 1-25. DOI: hp://dx.doi.org/10.1017/ S0014479713000409. Mauleon R, Triple L, Snelling J, Vazquez S, Corral R, Leach JE. 2013. A pipeline for automated diagnosc primer design based on genomic sequence alignment of target and non- target genomes. Phytopathology 103(6/ S2):92. Maung ZTZ, Win, PP, Kyi PP, Myint YY, De Waele D. 2013. Populaon dynamics of the rice root nematode Hirschmanniellaoryzae on monsoon rice in Myanmar. Arch. Phytopathol. Plant Prot. 46(3):348-356. Miro B, Ismail AM. 2013. Tolerance of anaerobic condions caused by ooding during germinaon and early growth in rice (Oryza sava L.). Front. Plant Sci. 4(269):1-18. Mishra KK, Vikram P, Yadaw RB, Swamy BPM, Dixit S, Sta. Cruz MT, Maturan P, Marker S, Kumar A. 2013. qDTY 12.1 : a locus with a consistent eect on grain yield under drought in rice. BMC Genet. 14:12. Mohammadi R, Mendioro MS, Diaz GQ, Gregorio GB, Singh RK. 2013. Mapping quantave trait loci associated with yield and yield components under reproducve stage salinity stress in rice (Oryza sava L.). J. Genet. 92(3):11. Moreira AS, Horgan FG, Murray TE, Kakouli- Duarte T. 2013. Bumblebee (Hymenoptera: Apidae) sample storage for a posteriori molecular studies: Interacons between sample storage and DNA-extracon techniques. Eur. J. Entomol. 110(3):419-425. 9 Annual Report 2013 IRRI scientic publications for 2013 Morris K, Horgan FG, Gri n CT. 2013. Spaal and temporal dynamics of Meloidogyne minor on creeping bentgrass in golf greens. Plant Pathol. 62:1166-1172. Moaleb KA, Mohanty S, Hoa Thi Khanh Hoang, Rejesus RM. 2013. The eects of natural disasters on farm household income and expenditures: a study on rice farmers in Bangladesh. Agric. Syst. 121:43-52. Mulki MA, Jighly A, Ye G, Emebiri LC, Moody D, Ansari O, Ogbonnaya FC. 2013. Associaon mapping for soilborne pathogen resistance in synthec hexaploid wheat. Mol. Breed. (31):299-311. Murray TE, Coey MF, Kehoe E, Horgan FG. 2013. Pathogen prevalence in commercially reared bumble bees and evidence of spillover in conspecic populaons. Biol. Conserv. 159:269-276. Negrao S, Almadanim MC, Pires IS, Abreu IA, Maroco J, Courtois B, Gregorio GB, McNally KL, Oliveira MM. 2013. New allelic variants found in key rice salt-tolerance genes: an associaon study. Plant Biotechnol. J. 11(1):87-100. Newton RJ, Hay FR, Ellis RH. 2013. Seed development and maturaon in early spring-owering Galanthusnivalis and Narcissuspseudonarcissus connues post- shedding with lile evidence of maturaon in planta. Ann. Bot. 111:945-955. Ng-Hublin JSY, Singleton GR, Ryan U. 2013. Molecular characterizaon of CryptosporidiumSpp. from wild rats and mice from rural communies in the Philippines. Infect. Genet. Evol. 16:5-12. Niem, J, Gundersen B, Inglis DA. 2013. Eects of soil ooding on the survival of two potato pathogens, Scleroniascleroorum and Vercilliumdahliae. Am. J. Potato Res. 90(6):578-590. Nishimura M, Yamano T. 2013. Emerging private educaon in Africa: determinants of school choice in rural Kenya. World Dev. 43:266- 275. Panda A. 2013. Climate variability and the role of access to crop insurance as a social- protecon measure: insights from India. Dev. Policy Rev. 15:795-807. Panda A, Upasna S, Ninan KN, Pa A. 2013. Adapve capacity contribung to improved agricultural producvity at the household level: Empirical ndings highlighng the importance of crop insurance. Glob. Environ. Change 23(4):782-790. Park SK, Kwak DY, Park DS, Shin D, Hwang WH, Kim MH, Hur YJ, Cho JH, Song YC, Lee JY, Nam MH, Choi IR, Lee JH. 2013. Fine mapping of Grh1, a major gene associated with anbiosis to green rice leaopper in rice. Mol. Breed. 32:729-733. Pasuquin EM, Hasegawa T, Eberbach P, Reink Re, Wade LJ, Lafarge T. 2013. Responses of eighteen rice (OryzasavaL.) culvars to temperature tested using two types of growth chambers. Plant Prod. Sci. 16(3):217-225. Pede VO. 2013. Diversity and regional economic growth: evidence from US counes. J. Econ. Dev. 38(3):111-127. Pembleton LW, Wang J, Cogan NOI, Pryce J.E, Ye G, Bandaranayake CK, Hand ML, Baillie RC, Drayton MC, Lawless K., Erb S, Dobrowolski MP, Sawbridge TI, Spangenberg GC, Smith K,F, Forster JW. 2013. Candidate gene-based associaon genecs analysis of herbage quality traits in perennial ryegrass (Lolium perenne L.). Crop Pasture Sci. 64:244-253. Phong ND, Tuong TP, Phu ND, Nang ND, Hoanh CT. 2013. Quanfying source and dynamics of acidic polluon in a coastal acid sulphate 10 IRRI scientic publications for 2013 soil area. Water Air Soil Pollut. 224(1765):1- 18. Plaen JD, Egdane JA, Ismail AM. 2013. Salinity tolerance, Na+ exclusion and allele mining of HKT1; 5 in Oryzasava and O. glaberrima: many sources, many genes, one mechanism? BMC Plant Biol. 13(1)32. Price AH, Beligan G, Willocquet L, Savary S. 2013. A strategy to idenfy sources of quantave resistance in pathosystems involving disease escape and physiological resistance: the case study of rice sheath blight. Plant Pathol. 62:888-899. Price AH, Norton GJ, Salt DE, Ebenhoeh O, Meharg AA, Islam MR, Sarma RN, Dasgupta T, Ismail,AM, McNally KL, Zhang H, Dodd IC, Davies WJ. 2013. Alternate we ng and drying irrigaon for rice in Bangladesh: is it sustainable and has plant breeding something to oer? Food Energy Secur. 2(2): 120-129. Qin J, Impa SM, Tang Q, Yang S, Yang J, Tao Y, Jagadish KSV. 2013. Integrated nutrient, water and other agronomic opons to enhance rice grain yield and N use e ciency in double-season rice crop. Field Crops Res. 148:15-23. Ram H, Singh Y, Saini KS, Kler DS, Timsina J. 2013. Tillage and planng method eects on yield, water use e ciency and protability of soybean-wheat system on a loamy sand soil. Exp. Agric. 49(4): 524-542. Raorane ML, Mule SK, Varadarajan AR, Pabuayon IM, Kohli A. 2013. Protein SUMOylaon and plant abioc stress signaling: in silico case study of rice RLKs, heat-shock and Ca2+-binding proteins. Plant Cell Rep. 32:1053-1065. Rebolledo MC, Luquet D, Courtois B, Henry A, Soulie JC, Rouan L, Dingkuhn M. 2013. Can early vigour occur in combinaon with drought tolerance and e cient water use in rice genotypes? Funct. Plant Biol. 46:51-65. Reddy JN, Patnaik SSC, Sakar RK, Das SR, Singh VN, Dana I, Singh NK, Sharma RN, Ahmed T, Sharma KK, Verulkar S, Collard BCY, Pamplona AM, Singh US, Sarkarung S, Mackill DJ, Ismail AM. 2013. Overview of the eastern India rainfed lowland shule breeding network (EIRLSBN). SABRAO J. Breed. Genet. 45(1):57-66. Rose TJ, Impa SM, Rose MT, Pariasca-Tanaka J, Mori A, Heuer S, Johnson-Beebout SE, Wissuwa M. 2013. Enhancing phosphorus and zinc acquision e ciency in rice: a crical review of root traits and their potenal ulity in rice breeding. Ann. Bot. 112:331-345. Sandhu N, Jain S, Kumar A, Mehla BS, Jain R. 2013. Genec variaon, linkage mapping of QTL and correlaon studies for yield, root, and agronomic traits for aerobic adaptaon. BMC Genet. 14(104):1-16. Sangha JS, Chen YH, Kaur J, Khan W, Abduljaleel Z, Alanazi MS, Mills A, Adalla CB, Benne J, Prithiviraj B, Jahn GC, Leung H. 2013. Proteome analysis of rice (Oryzasava L.) mutants reveals dierenally induced proteins during brown planthopper (Nilaparvata lugens) infestaon. Int. J. Mol. Sci. 14:3921-3945. Sasaki K, Kazama Y, Chae Y, Sato T. 2013. Conrmaon of novel quantave trait loci for seed dormancy at dierent ripening stages in rice. Rice Sci. 20(3):207-212. Sato T. 2013. Beyond water-intensive agriculture: expansion of Prosopisjuliora and its growing economic use in Tamil Nadu, India. Land Use Policy 35:283-292. Satoh K, Kondoh H, De Leon TB, Macalalad RJA, Cabunagan RC, Cabauatan PQ, Mauleon R, Kikuchi S, Choi IR. 2013. Gene expression 11 Annual Report 2013 IRRI scientic publications for 2013 responses to rice tungro spherical virus in suscepble and resistant near-isogenic rice plants. Virus Res. 171(1):111-120. Sepningsih EM, Ignacio JCI, Sendon PMD, Sanchez DL, Ismail AM, Mackill DJ. 2013. QTL mapping and conrmaon for tolerance of anaerobic condions during germinaon derived from the rice landrace Ma-Zhan red. Theor. Appl. Genet. 126(5):1357-1366. Shi WJ. 2013. Source-sink dynamics and proteomic reprogramming under elevated night temperature and their impact on rice yield and grain quality. New Phytol. 197:825-837. Singh HN, Singh S, Singh US, Singh J, Zaidi NW, Mohanty S. 2013. Economic evaluaon of Pusa rice hybrid 10 culvaon: a micro- economic evidence of Uarakhand, India. Indian J. Tradion. Knowl. 12(3):472-477. Singh VK, Dwivedi BS, Buresh RJ, Jat ML, Majumdar K, Gangwar B, Govil V, Singh SK. 2013. Potassium ferlizaon in rice- wheat system across Northern India: crop performance and soil nutrients. Agron. J. 105(2):471-481. Singh RK, Murori R, Ndayiragije A, Bigirimana J, Kimani JM, Kaneyka ZL, Surapong S, Ndikumana I, Lamo J, Mkuya MS, Tusekelege H, Rickman J. 2013. Rice breeding acvies in Eastern and Southern Africa. SABRAO J. Breed. Genet. 45:73-83. Singh US, Dar MH, Singh S, Zaidi NW, Bari MA, Mackill DJ, Collard BCY, Singh VN, Singh JP, Reddy JN, Singh RK, Ismail AM. 2013. Field performance, disseminaon, impact and tracking of submergence tolerant (Sub1) rice variees in South Asia. SABRAO J. Breed. Genet. 45(1):112-131. Srinivasachary, Beligan G, Willocquet L, Savary S. 2013. A strategy to idenfy sources of quantave resistance in pathosystems involving disease escape and physiological resistance: the case study of rice sheath blight. Plant Pathol. 62(4):888-899. Stuart AM, Presco CV, Singleton G. 2013. Habitat manipulaon in lowland rice- coconut cropping systems of the Philippines-an eecve rodent pest management strategy. Pest Manage. Sci. 2013(e-First): 7. Suh JP, Jeung JU, Noh TH, Cho YC, Park SH, Park HS, Shin MS, Kim CK, Jena KK. 2013. Development of breeding lines with three pyramided resistance genes that confer broad-spectrum bacterial blight resistance and their molecular analysis in rice. Rice 6(5):1-11. Swamy BPM, Kumar A. 2013. Genomics-based precision breeding approaches to improve drought tolerance in rice. Biotechnol. Adv. 31:1308-1318. Swamy BPM, Ahmed HU, Henry A, Mauleon R, Dixit S, Vikram P, Tilao R, Verulkar SB, Perraju P, Mandal NP, Variar M, Robin S, Chandrababu R, Singh ON, Dwivedi JL, Das SP, Mishra KK, Yadaw RB, Aditya TL, Karnakar B, Satoh K, Moumeni A, Kikuchi S, Leung H, Kumar A. 2013. Genec, physiological, and gene expression analyses reveal that mulple QTL enhance yield of rice mega- variety IR64 under drought. PLOS ONE 8(5):e62795. Tanaka T, Sato T, Watanabe K, Wang Y, Yang D, Inoue H, Li KZ, Inamura T. 2013. Irrigaon system and land use eect on surface water quality in river, at lake Dianchi, Yunnan, China. J. Environ. Sci. 25(6):1107-1116. Thenkabail PS, Marioo I, Gumma MK, Middleton EM, Landis DR, Huemmrich KF. 2013. Selecon of Hyperspectral Narrowbands (HNBs) and composion of Hyperspectral Twoband Vegetaon Indices 12 IRRI scientic publications for 2013 (HVIs) for biophysical characterizaon and discriminaon of crop types using eld reectance and hyperion/EO-1 Data. IEEE J. Sel. Top. Appl. Earth Obs. Remote Sens. 6(2):427-439. Torres RO, Henry A, Vial L. 2013. Dryer facility using hot air exhaust from an air condioner. Philipp. J. Crop Sci. 38(2):37-42. Torres RO, McNally KL, Vera Cruz C, Serraj R, Henry A. 2013. Screening of rice genebank germplasm for yield and selecon of new drought tolerance donors. Field Crops Res. 147:12-22. Tsusaka TW, Otsuka K. 2013. The changes in the eects of temperature and rainfall on cereal crop yields in Sub-Saharan Africa: a country level panel data study, 1989 to 2004. Environ. Econ. 4(2):70-80. Van Buyten, E, Banaay CGB, Vera Cruz C, Hoe M. 2013. Identy and variability of Pythium species associated with yield decline in aerobic rice culvaon in the Philippines. Plant Pathol. 62:139-153. van Wart J, van Bussel LGJ, Wolf J, Licker R, Grassini P, Nelson A, Boogaard H, Gerber J, Mueller ND, Claessens L, van Iersum MK, Cassman KG. 2013. Use of agro-climac zones to upscale simulated crop yield potenal. Field Crops Res. 143:44-55. Vera Cruz CM, Nguyen MHR, Lang JM, Burgos MRG, Coyn B, Verdier V, Mishra D, Raj Y, Leach JR. 2013. Detecon of Xanthomonas oryzae pathovars from rice seeds: an assay potenally viable for use in seed trade and germplasm exchange. Phytopathol. 103 (6/ S2):152. Vial LK, Lefroy RDB, Fukai S. 2013. Eects of hardpan disrupon on irrigated dry-season maize and on subsequent wet-season lowland rice in Lao PDR. Field Crops Res. 152(1):65-73. Vinod KK, Heuer S. 2013. Approaches towards nitrogen- and phosphorus-e cient rice. AoB Plants 77:85-97. Wang JM, Lin XY, Sun Q, Jena KK. 2013. Evaluaon of cold tolerance for japonica rice variees from dierent country. Adv. J. Food Sci. Technol. 5(1):54-56. Wang P, Fouracre J, Kelly S, Karki S, Gowik U, Aubry S, Shaw MK, Westho P, Slamet- Loedin IH, Quick WP, Hibberd JM, Langdale JA. 2013. Evoluon of GOLDEN2-LIKE gene funcon in C 3 and C 4 plants. Planta 237(2):481-495. Wang Y, Zang JP, Sun Y, Ali J, Xu JL, Li ZK. 2013. Background-independent quantave trait loci for drought tolerance idened using advanced backcross introgression lines in rice. Crop Sci. 53(2):430-441. Watanabe T, Hosen Y, Agbisit R, Llorca L, Katayanagi N, Asakawa S, Kimura M. 2013. Changes in community structure of Methanogenic archaea brought about by water-saving pracce in paddy eld soil. Soil Biol. Biochem. 58:235-243. Wei Y, Bao J, Cao H, Zhai J, Jantasuriyaratc C, Zuo S, Pan X, Wang H, Zhou B. 2013. Haplotype variaon and phylogeography of Rhizoctonia solani AG1-IA strains based on rDNA5.8S-ITS and -acn gene sequence analyses. Mycol. Prog. DOI 10.1007/s11557-013-0909-3. Win PP, Kyi PP, Maung ZTZ, De Waele D. 2013. Populaon dynamics of Meloidogyne graminicola and Hirschmanniellaoryzae in a double rice-cropping sequence in the lowlands of Myanmar. Nematology 15:795- 807. Winkel A, Colmer TD, Ismail AM, Pedersen O. 2013. Internal aeraon of paddy eld rice (Oryzasava) during complete submergence - importance of light and oodwater O2. New Phytol. 197:1193-1203. 13 Annual Report 2013 IRRI scientic publications for 2013 Yadaw RB, Dixit S, Raman S, Mishra KK, Vikram P, Swamy BPM, Sta Cruz Ma. T, Maturan PT, Pandey M, Kumar A. 2013. A QTL for high grain yield under lowland drought in the background of popular rice variety Sabitri from Nepal. Field Crops Res. 144:281-287. Ye G, Collard BCY, Zhao XQ, Nissila E. 2013. Enhancing rice breeding e ciency: the role of breeding informacs. SABRAO J. Breed. Genet. 45(1): 143-158. Yasuda K, Tsukiyama T, Karki S, Okumoto Y, Teraishi M, Saito H, Tanisaka T. 2013. Mobilizaon of the acve transposon MPing in interspecic hybrid rice between Oryzasava and O.glaberrima. Euphyca 32:1053-1065. Yuan WL, Xing DY, Zhang YB, Visperas RM. 2013. Integraon of yield and physiological traits for developing new rice variees with higher yield potenal in tropical environment. J. Food Agric. Environ. 11(1):657-663. Zhang F, Du ZL, Huang LY, Vera Cruz C, Zhou YL, Li ZK. 2013. Comparave transcriptome proling reveals dierent expression paerns in Xanthomonasoryzae pv. oryzae strains with putave virulence-relevant genes. PLOS One 8(5):1-13. Zhang F, Jiang YZ, Yu SB, Ali J, Paterson AH, Khush GS, Xu JL, Gao YM, Fu BY, Lae R, Li ZK. 2013. Three genec systems controlling growth, development and producvity of rice (Oryzasava L.): a reevaluaon of the Green Revoluon. Theor. Appl. Genet. 126:1011-1024. Zhang HJ, Wang H, Qian YL, Xia JF, Li ZF, Shi YY, Zhu LH, Ali J, Gao YM, Li ZK. 2013. Simultaneous improvement and genec dissecon of grain yield and its related traits in a backbone parent of hybrid rice (Oryza sava L.) using selecve introgression. Mol. Breed. 31:181-194. Zhang HJ. Wang H, Ye GY, Qian YL, Shi YY, Xia JF, Li ZF, Zhu LH, Gao YM,. Li ZK. 2013. Improvement of yield and its related traits for backbone hybrid rice parent Minghui 86 using advanced backcross breeding strategies. J. Integr. Agric. 12(4):561-570. Zhang HY, He DY, Kasetsomboon T, Zhou H, Li P, Li XL, Jantasuriyarat C, Zhou B. 2013. Analysis of selected Singleton Transposable Elements (SSTEs) and their applicaon for the development of land PATE markers in Magnaportheoryzae. J. Gen. Plant Pathol. 79(2):96-104. Zhao XH, Qin Y, Jia BY, Kim SM, Lee HS, Eun MY, Kim KM, Sohn JK. 2013. Comparison and analysis of Q epistac eects and QTL environment interacons for yield traits using DH and RILs populaons in rice. J. Integr. Agric. 12(2):198-208. Zhao XQ, Fitzgerald M. 2013. Climate change: implicaons for the yield of edible rice. PLOS One 8(6):1-9. Zhu CW, Cheng WG, Sakai H, Oikawa S, Laza RC, Usui Y, Hasegawa T. 2013. Eects of elevated [CO 2 ] on stem and root lodging among rice culvars. Chin. Sci. Bull. 58(15):1787-1794.