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Plant Biotechnol Rep (2015) 9:259267 Online ISSN 1863-5474

DOI 10.1007/s11816-015-0362-7 Print ISSN 1863-5466

ORIGINAL ARTICLE

Competitive activity as a constitutive promoter


in the 50 -proximal regulatory region of the Capsicum
capsanthincapsorubin synthase gene
Sun-Hwa Ha1

Received: 23 June 2015 / Accepted: 24 June 2015 / Published online: 10 July 2015
Korean Society for Plant Biotechnology and Springer Japan 2015

Abstract Depending on the nature of the Capsicum characteristics with the advantages of a plant origin and
capsanthincapsorubin synthase gene (CaCcs) showing a size competitiveness compared with the 35S promoter.
chromoplast specificity, the 50 -upstream region of CaCcs
from -2279 to ?30 was isolated from the Korean red
Keywords Arabidopsis  Capsanthincapsorubin
pepper genomic library for promoter analysis. The full-
synthase  Capsicum  Chromoplast-specific  Constitutive 
length 2.3-kb promoter and its deletion mutants similarly
Promoter  Tobacco
drove GUS expression in chromoplastic tissues such as
anthers and styles in transgenic Arabidopsis flowers.
However, the shortest 397-bp promoter (CaCcs-P1) con- Introduction
taining the -367 to ?30 region displayed histochemically
high GUS expression in non-chromoplastic tissues such as The capsanthincapsorubin synthase gene (CaCcs) is
sepals and leaves, as well as in chromoplastic tissues. The specifically expressed during chromoplast development in
efficient constitutive expression of CaCcs-P1 was higher fruits that accumulate the Capsicum-specific keto-
than that of the dual 35S promoter (d35S-P) with respect to carotenoids, capsanthin, and capsorubin (Bouvier et al.
mRNA expression (at least threefold) and enzyme activity 1994). The CaCcs expression is very tightly linked with the
(fourfold) and was maintained in the whole body of plants ripening process, showing simultaneous strong induction in
during all developmental stages. Ubiquitous GUS expres- ripe fruits, but not in any other plant organs including
sion by CaCcs-P1 was elicited at the highest level in stems, leaves, stems, roots, and green fruits (Ha et al. 1999).
followed by leaves, flowers, roots, young siliques, and Moreover, transcription of CaCcs is not detected in Cap-
mature seeds, with respect to both transcript levels and sicum varieties that show yellow ripe colors because of
enzyme activity. More effective activity of CaCcs-P1 impairment of the biosynthetic pathway of capsanthin and
compared to d35S-P (1.4-fold higher) was also confirmed capsorubin, the pigment metabolites responsible for the red
in transgenic tobacco plants. Together with the prediction color of Capsicum fruits through their de novo biosynthesis
of cis-acting motifs that allow diverse spatial specificity, during ripening (Bouvier et al. 1994; Ha et al. 2007;
we report a promoter displaying efficient constitutive Ramchiary et al. 2014). This intrinsic feature of CaCcs
expression in Capsicum makes it a good candidate gene for
the development of chromoplast-specific promoters. In
previous studies, a putative promoter region containing a 50
Electronic supplementary material The online version of this 2.3-kb fragment upstream of the ATG initiation codon of
article (doi:10.1007/s11816-015-0362-7) contains supplementary
material, which is available to authorized users. CaCcs was examined for activity by tomato explant
regeneration (Kuntz 2002). Activity of the CaCcs promoter
& Sun-Hwa Ha was compared with that of the fibrillin promoter through a
sunhwa@khu.ac.kr
b-glucuronidase (GUS) assay in diverse organs (leaves,
1
Graduate School of Biotechnology, Kyung Hee University, fruits, and flowers) and during different developmental
Yongin 446-701, Republic of Korea stages (fruits and flowers). The fibrillin gene encodes a

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protein that is tightly associated with the Capsicum chro- N-terminal region of pepper CaCcs cDNA was subcloned into
moplasts for the packaging and organization of carotenoids pBluescript SK (?) (Stratagene) as shown in supplementary
(Derue`re et al. 1994). As expected, both promoters dis- Fig. S1. A 2.3-kb PCR product (-2279 to ?30) generated by
played chromoplast specificity in fruits and flowers. Their removal of a 246-bp region in the N-terminal coding region of
activity at 4 days after breaker stage was even higher than CaCcs was finally cloned into the EcoRI and XbaI sites of
that of the known ripening-induced tomato polygalactur- pBluescript KS (?) (Stratagene). This 50 2309-kb region
onase promoter (Bird et al. 1988). In contrast to the fibrillin upstream from the ATG start codon of the CaCcs was con-
promoter, which was also activated in mature green fruits, sidered the full-length CaCcs promoter (referred to as CaCcs-
the CaCcs promoter showed a large increase in activity P6 hereafter) for analysis of promoter activity.
around the mature stages of fruits and anthers of flower
tissues, accompanied by changes to visibly red color phe-
Construction of a deletion series of the 50 -upstream
notypes (Kuntz 2002).
regulatory region of CaCcs
In addition to the chromoplast specificity of the CaCcs
promoter described above, oxidative stress-inducible char-
To prepare the deletion series of the 2.3-kb CaCcs pro-
acteristics have also been suggested from experiments
moter that is mainly composed of multiple direct repeats,
showing that diverse reactive oxygen species (ROS) progen-
self-ligations after dual restriction enzyme digestion were
itors and pro-oxidants triggered rapid induction of simulta-
designed to give promoter regions of 2.0, 1.4, 1.0, 0.7, and
neous expression of multiple carotenogenic genes including
0.4 kb as follows: EcoRV and ScaI for CaCcs-P5, EcoRV
CaCcs, even in mature green pericarp disks (Bouvier et al.
and klenow fragment-treated AvaII (partial cut) for CaCcs-
1998). A partial CaCcs promoter of 650 bp was confirmed to
P4, ClaI and TaqI for CaCcs-P3, EcoRV and StuI for
elicit high expression of a GUS reporter activity under
CaCcs-P2, EcoRV and klenow fragment-treated AvaII (full
oxidative stress conditions in a transient assay in fruit.
cut) for CaCcs-P1 (Supplementary Fig. S2).
On the basis of the above findings, the CaCcs promoter
Next, the Gus:Tnos fragment derived from pBI221 was
might be considered a target with great potential to extend
incorporated into six deletion promoter series vectors using
our range of options for the expression of foreign genes in
the same XbaI and SacI sites. Vectors expressing Gus
the production of genetically modified (GM) crops. To
under the control of the six CaCcs-P deletion series were
evaluate this possibility, we isolated a CaCcs promoter of
named pKS-CaCcs-P1-6::Gus:Tnos.
over 2.3 kb by plaque screening of a genomic library
constructed with Korean red pepper. This promoter was
progressively deleted to give a series of six truncated forms Binary vector construction and plant transformation
that were transformed in combination with the GUS
reporter gene into Arabidopsis plants. Fortunately, we To express the CaCcs-P deletion series in plants, each
discovered efficient constitutive promoter activity in the cassette containing CaCcs-P1-6::Gus:Tnos was excised by
shortest promoter of 397 bp including the region from 367 SalI and EcoRI and ligated into pCAMBIA 2300 (Cambia,
to ?30, named CaCcs1 promoter (CaCcs-P1). The strength Canberra, Australia). A 2-kb fragment of the Bar expres-
of CaCcs-P1 was compared with that of the dual 35S sion cassette was additionally incorporated into each
promoter (d35S-P) in two transgenic plant systems, Ara- plasmid to prepare six binary vectors of CaCcs P1-6. These
bidopsis and tobacco, to evaluate its usefulness as an effi- constructs were then separately transformed into
cient constitutive promoter for use in plant biotechnology. Agrobacterium strain EHA105 using the freezethaw
method and consecutively introduced into Arabidopsis
ecotype Columbia (Col-0) using the floral dip method. A
Materials and methods construct for CaCcs-P1 was further transformed into
Agrobacterium strain GV3101 and used to generate trans-
Cloning of a 50 -upstream regulatory region genic tobacco plants using the previously reported leaf disk
of the Capsicum Ccs promoter method (Lim et al. 2012). As reference controls for pro-
moter strength comparison, previously confirmed trans-
Using a genomic library from Korean red pepper (Capsicum genic plants including a single 35S promoter (s35S-P-
annuum cv. NocKwang) constructed in the kEMBL3/BamHI transgenic Arabidopsis) and d35S-P-transgenic plants of
vector (Stratagene, La Jolla, CA), approximately 105 plaques Arabidopsis and tobacco were used (Chung et al. 2008;
were screened with 32P-labeled CaCcs full-length cDNA as a Liang et al. 2009; Lim et al. 2013). All transgenic plants
probe (Ha et al. 1999). After EcoRI digestion of putative were selected using 0.3 % Basta spray and grown in a
CaCcs genomic clones, a positive 2.5-kb signal band detected chamber under a 16-h photoperiod at 22 C during the day
on Southern blotting with a 32P-200 bp fragment of the and 18 C at night.

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Histochemical and fluorometric GUS assays was converted into first-strand cDNAs and subjected to
semi-quantitative PCR using an mRNA Selective PCR Kit
To perform the GUS histochemical assay, Arabidopsis (Takara, Tokyo, Japan). The reaction was carried out for 25
plants were stained with 1 % 5-bromo-4-chloro-3-indolyl cycles using a Gus-specific primer set (50 -
b-D-glucuronide (X-Gluc) solution and then observed and ACCTGCGTCAATGTAATGTTCTGC-30 /50 -CTCCCTGC
imaged using a light microscope (Olympus, Tokyo, Japan) TGCGGTTTTTCA-30 ). A primer set specific for the Ara-
equipped with a digital camera (Olympus). To measure bidopsis elongation factor 1 gene (AtEF1a; 50 -GTTCACA
GUS activity fluorometrically, a 4-methyl umbelliferyl TTAACATTGTGGTCATT-30 /50 -CAGGTACCAGTGATC
b-D-glucuronide (MUG) assay was carried out using Ara- ATGTTCTTG-30 ) was used as a reference to normalize the
bidopsis and tobacco plants as previously reported (Liang amount of RNA. Two PCR products of 478 and 305 bp in
et al. 2011; Lim et al. 2013). A Qubit fluorometer (Invit- size, respectively, are expected. PCR band intensity was
rogen, Carlsbad, CA) and the FluorAceTM b-glucuronidase quantitatively analyzed using a densitometer and Quantity
Reporter Assay Kit (Bio-Rad, Hercules, CA) were used for One software (Bio-Rad, Hercules, CA).
quantification and assaying enzyme activity of GUS pro-
tein, respectively. Values with error bars were calculated Computational analysis
from three experimental replicates.
The 50 -upstream DNA sequence including the -367 to
RT-PCR analysis ?30 region for CaCcs1-P was analyzed to search for cis-
acting elements using public web sites including PLACE
Total RNA from various tissues of Arabidopsis prepared (http://www.dna.affrc.go.jp/PLACE/signalscan.html),
with a previously described procedure (Lim and Ha 2013) PlantCARE (http://bioinformatics.psb.ugent.be/

Fig. 1 Schematic illustration of binary vectors used for promoter pCAMBIA as the plasmid backbone. b Histochemical GUS staining
deletion analysis and comparison of their promoter activities in results for leaves (left) and flowers (right) of representative lines for
transgenic Arabidopsis plants. a Gus expression vectors driven by the CaCcs-P6, P5, P4, P2, and P1. Unfortunately, transgenic lines for
full-length CaCcs promoter (CaCcs-P6) and its serial truncation CaCcs-P3 have not been obtained. NC indicates non-transgenic
promoters (CaCcs-P5, P4, P3, P2, and P1) were constructed using control Arabidopsis Col-0 plants

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webtools/plantcare/html/), and Softberry (http:// deletion vectors driving GUS reporter expression were
linux1.softberry.com/berry.phtml?topic=tssp&group= constructed with promoter sizes of 2309 bp (P6), 2001 bp
programs&subgroup=promoter) databases. (P5), 1,379 bp (P4), 984 bp (P3), 661 bp (P2), and 397 bp
(P1) to identify the necessary region for regulation of
chromoplast specificity in the flower organs of Arabidopsis
Results and discussion plants via stable transformation (Fig. 1a and supplementary
Fig. S2). More than 10 independent transgenic plants were
Activity of the CaCcs promoter and its deletion generated and stained for GUS expression driven by full-
series in transgenic Arabidopsis plants length CaCcs-P6 and the 50 deletion fragments CaCcs-P5,
P4, P2, and P1; unfortunately transgenic plants were not
Based on the chromoplast-specific characteristics of the 50 generated for CaCcs-P3. Unlike observations in tomato
upstream 2.3-kb CaCcs promoter that showed strong flowers, GUS expression driven by CaCcs-P6 in Ara-
expression in fruits and anthers and weak expression in bidopsis was displayed weakly in anthers but strongly in
petals of transgenic tomato plants (Kuntz 2002), six sepals. Progressive 50 -deletions from CaCcs-P5 to CaCcs-

Fig. 2 Comparison of activity


between d35S-P and CaCcs-P1
in transgenic Arabidopsis
plants. a Histochemical GUS
staining was performed with
five independent d35S-P:Gus
and CaCcs-P1:Gus transgenic
Arabidopsis lines at the 3-week-
old seedling stage. b Enzymatic
values for GUS activity levels
were quantified using a
fluorometric MUG assay with
the same five independent lines
for d35S-P and CaCcs-P1.
Error bars show the standard
deviations of four technical
replicates. Numbers above the
bars indicate fold changes
relative to the value of the d35S-
P-10 line

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Fig. 3 Maintenance of
constitutive expression by
CaCcs-P1 compared with two
types of 35S-P. Histochemical
GUS staining was performed
with whole plant bodies of
transgenic Arabidopsis plants at
two different developmental
stages of 4 and 5 weeks old

P2 slightly strengthened GUS expression in anthers but lines for each promoter were further developed toward T2
abolished expression in sepals (Fig. 1b). Interestingly, for generation and their promoter activities were compared by
the shortest element, CaCcs-P1, high GUS expression in GUS fluorometric assay (Fig. 2b). In general, CaCcs-P1
sepals was revived and higher GUS expression was resulted in 3- to 31-fold higher expression than d35S-P;
observed in the anthers and filaments in stamens and the d35S-P-10 could be reasonably considered a representative
styles in pistils. Moreover, CaCcs-P1 showed an unex- line with average activity whereas d35S-P-5 was excluded
pectedly deep blue signal in leaves, suggesting its ability to as an exceptional line displaying 88-fold higher activities
strongly drive GUS expression in transgenic Arabidopsis than the average line of d35S-P-10 and 29-fold higher
leaves in contrast to the other promoters (Fig. 1b). The activity than the lowest line of CaCcs-P1-2 (Fig. 2b).
observation of GUS staining driven by CaCcs-P1 in non- To determine whether the efficient constitutive expres-
chromoplastic tissues (leaves and sepals) as well as chro- sion of CaCcs-P1 is maintained during the entire process of
moplastic tissues (anthers and styles among flower organs) plant development, histochemical GUS staining of two
suggests the potential of CaCcs-P1 as a ubiquitously lines (CaCcs-P1-4 and CaCcs-P1-12) was performed at
expressed constitutive promoter. further developmental stages of 4 and 5 weeks compared
with a d35S-P-5 as an exceptionally dominant line and an
CaCcs-P1 has more efficient activity than additional s35S-P-1 line, as previously reported (Chung
d35S-P in transgenic Arabidopsis plants et al. 2008). In accordance with high GUS enzyme activ-
ities induced by CaCcs-P1 (Fig. 2b), the GUS staining
To compare the promoter strength of CaCcs-P1 with that signal in two CaCcs-P1 lines was maintained much more
of d35S-P for constitutive expression, 12 Arabidopsis strongly in the whole plant body including leaves, stems,
plants of CaCcs-P1:Gus and 15 of d35S-P:Gus were roots, and flowers during the three stages of plant devel-
stained with X-Gluc solution at the 3-week-old seedling opment, with levels similar to those in the d35S-P-5 line
stage of T1 generation. All transgenic plants showed a but much higher than in the s35S-P-1 line (Fig. 3).
similar dense blue color due to GUS expression in whole
body regions of transgenic seedlings. Among them, five Ubiquitous expression driven
representative lines for each promoter were selected based by CaCcs-P1 in transgenic Arabidopsis plants
on their strong blue staining (Fig. 2a) and their T-DNA
insertion was confirmed to be low copy number (\2) by To investigate the promoter characteristics on the basis of
genomic Southern blot analysis except for the presence of organ specificity, the ability of CaCcs-P1 to drive Gus
four copies in the d35S-P-2 line (data not shown). The five expression was compared among different organs of rosette

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Fig. 4 Activity of CaCcs-P1 in


driving GUS expression among
different organ types of
transgenic Arabidopsis plants.
a Detection of Gus transcripts
by semi-quantitative RT-PCR
(upper) and relative expression
levels (lower) driven by CaCcs-
P1 in rosette leaves (RL),
cauline leaves (CL), stems (St),
roots (R), flowers (F), siliques
(Si), and seeds (Se). Two
independent lines of d35S-
P were used to compare the
levels of Gus transcripts with
those of CaCcs-P1 in the same
RL organs; Arabidopsis
elongation factor 1-a (AtEF1a)
was used as a normalization
control for RNA quantity. The
graph was drawn with d35S-P-
10 assigned a value of 1.
Additional numbers above bars
indicate fold changes among
diverse organs for the CaCcs-
P1-4 line. Error bars show the
standard deviations (SDs) of
three replicates. b GUS enzyme
activities were measured by
MUG assay using two
independent CaCcs-P1 lines.
Results represent mean SD
for six values, including two
biological and three technical
repeats. Numbers above bars
indicate fold changes among
diverse organs for each CaCcs-
P1 line

leaves (RL), cauline leaves (CL), stems (St), roots (R), young siliques, and mature seeds (Fig. 4a). Moreover, Gus
flowers (F), young siliques (Si), and mature seeds (Se) of mRNA was more abundant in green organs of leaves and
CaCcs-P1:Gus transgenic Arabidopsis plants by semi- stems and much less abundant in seeds than in other
quantitative RT-PCR analysis (Fig. 4a). In particular, Gus organs. Fluorometric GUS assays were also performed with
transcript levels for CaCcs-P1 in rosette leaves were the same organ samples for CaCcs-P1-4 and CaCcs-P1-12
compared with those for d35S-P using the representative (Fig. 4b). Except for low activity in seeds, high activity of
d35S-P-10 line and the transnormal d35S-P-5 line. Con- GUS enzyme was observed in all organs with a moderate
cordant with the results of GUS enzyme assays showing at difference between the two CaCcs-P-transgenic Ara-
least threefold higher activity (Fig. 2b), the fourfold higher bidopsis plants.
expression levels of Gus mRNA in CaCcs-P1-4 compared Collectively, these data indicate that CaCcs-P1 could
with d35S-P-10 confirmed the potent activity of CaCcs-P1 induce exogenous gene expression with higher activity
compared with d35S-P in rosette leaves (Fig. 4a). Among than d35S-P and in all organs examined, thus supporting its
organs, the activity of CaCcs-P1 was highest in stems, ubiquitous function (Figs. 2, 3, and 4). These results were
followed by leaves of cauline and rosette, flowers, roots, extremely consistent for mRNA level and enzyme activity,

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as well as for histochemical staining for GUS reporter greater potential as an efficient constitutive promoter than
expression in Arabidopsis plants. d35S-P in diverse dicotyledonous plants, as confirmed in
Arabidopsis and tobacco plants.
CaCcs-P1 has more efficient activity
than d35S-P in transgenic tobacco plants Putative cis-acting elements conferring organ
specificity of CaCcs-P1
To evaluate whether CaCcs-P1 acts as an efficient pro-
moter in other plant systems, ectopic GUS expression was To further investigate the surprising characteristic of con-
also examined in tobacco plants via stable transformation. stitutive expression of CaCcs-P1, the 50 -proximal DNA
Among 12 and 17 transformants for d35S-P and CaCcs-P1 sequences in the -367 to ?30 region were computationally
respectively, 4 and 8 independent lines showing moderate analyzed using public databases of PLACE, PlantCARE,
expression levels were selected on the basis of histo- and Softberry (Fig. 6 and Supplementary Table S1). The in
chemical GUS staining signals of leaf disk (data not silico analysis predicted a total of 46 cis-acting elements
shown) and their GUS enzyme activities were measured for diverse spatial specificity in green tissues of leaves and
and compared by fluorometric assay (Fig. 5). On average, stems (11), roots (5), flowers (20), and seeds (10) in both
CaCcs-P1 was a 1.4-fold stronger driver of GUS expres- DNA orientations. Combinatory positioning of regulatory
sion than d35S-P, suggesting that CaCcs-P1 might have cis-acting factors with respect to quality and quantity in

Fig. 5 Comparison of promoter


efficiency of d35S-P and
CaCcs-P1 in transgenic tobacco
plants. Enzymatic values for
GUS activity levels were
quantified using a fluorometric
MUG assay with four and eight
independent lines for d35S-
P and CaCcs-P1, respectively at
the 3-week-old seedling stage.
Error bars show the standard
deviations of three technical
replicates

Fig. 6 Schematic diagram


showing cis-acting motifs
computationally predicted for
diverse organ and tissue
specificity in both orientations
of the CaCcs-P1 region (-367
to ?1)

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diverse organs might affect the constitutive expression of specificity via deletion. We believe that the 397-bp pro-
CaCcs-P1. The additional prediction of 17 cis-acting ele- moter region of CaCcs-P1 (-367 to ?30) might be the best
ments suggests that CaCcs-P1 might be responsive to light choice for driving high levels of constitutive expression of
and related to defense, salt, and water stress as a stress transgenes in dicot plants for plant engineering because of
regulator (Supplementary Table S1). Further promoter its advantages of plant origin and size competitiveness
analysis is needed to test this hypothesis. compared with the 35S promoter.
In this study, we report a novel promoter of plant origin
that displays efficient constitutive characteristics. The most Acknowledgments This work was supported by Grants from the
Next-Generation BioGreen 21 Program (PJ011286012015 and
commonly used promoters for plant biotechnology are the PJ011094012015), Rural Development Administration, Republic of
35S promoter and its derivatives, for example those of Korea, and by the Basic Science Research Program through the
plant pathogens like Cauliflower Mosaic Virus (Odell et al. National Research Foundation of Korea (NRF-2013R1A1A2062998).
1985; Omirulleh et al. 1993). To date, the 35S promoter has
been used in almost all GM crops currently grown or tes-
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