R version 3.1.

3 (2015-03-09) -- "Smooth Sidewalk"

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[R.app GUI 1.65 (6912) x86_64-apple-darwin13.4.0]
[History restored from /Users/AlexG/.Rapp.history]
> getwd
function ()
.Internal(getwd())
<bytecode: 0x7f95a29342a8>
<environment: namespace:base>
> getwd()
[1] "/Users/AlexG"
> setwd(/Users/AlexG/Documents/ST221)
Error: unexpected '/' in "setwd(/"
> setwd(""/Users/AlexG/Documents/ST221")
+ setwd("/Users/AlexG/Documents/ST221")
Error: unexpected string constant in:
"setwd(""/Users/AlexG/Documents/ST221")
setwd(""
> setwd("/Users/AlexG/Documents/ST221")
> data1 <- read.csv(file="courseworkdata3.csv", head=TRUE, sep=",")
Error in file(file, "rt") : cannot open the connection
In addition: Warning message:
In file(file, "rt") :
cannot open file 'courseworkdata3.csv': No such file or directory
> heights <- data1[, 'height']
Error: object 'data1' not found
> yeasts <- data1[, 'yeast']
Error: object 'data1' not found
> seeds <- data1[, 'seeds']
Error: object 'data1' not found
> salts <- data1[, 'salt']
Error: object 'data1' not found
> yeastsA <- c(1,1,1,1,0,0,0,0,0,0,0,0,0,0,0,0)
> yeastsB <- c(0,0,0,0,1,1,1,1,0,0,0,0,0,0,0,0)
> yeastsC <- c(0,0,0,0,0,0,0,0,1,1,1,1,0,0,0,0)
> yeastsD <- c(0,0,0,0,0,0,0,0,0,0,0,0,1,1,1,1)
>
> m1 <- lm(heights ~ yeastsA + yeastsB + yeastsC + yeastsD + seeds + salts)
Error in eval(expr, envir, enclos) : object 'heights' not found
> coefficients(m1)
Error in coefficients(m1) : object 'm1' not found
>
> #1(c)
> anova(m1) #Generates the
Error in anova(m1) : object 'm1' not found
> getwd()
[1] "/Users/AlexG/Documents/ST221"
> setwd("/Users/AlexG/Documents/ST221/Coursework 2")
> data1 <- read.csv(file="courseworkdata3.csv", head=TRUE, sep=",")
> heights <- data1[, 'height']
> yeasts <- data1[, 'yeast']
> seeds <- data1[, 'seeds']
> salts <- data1[, 'salt']
> yeastsA <- c(1,1,1,1,0,0,0,0,0,0,0,0,0,0,0,0)
> yeastsB <- c(0,0,0,0,1,1,1,1,0,0,0,0,0,0,0,0)
> yeastsC <- c(0,0,0,0,0,0,0,0,1,1,1,1,0,0,0,0)
> yeastsD <- c(0,0,0,0,0,0,0,0,0,0,0,0,1,1,1,1)
> m1 <- lm(heights ~ yeastsA + yeastsB + yeastsC + yeastsD + seeds + salts)
> coefficients(m1)
(Intercept) yeastsA yeastsB yeastsC yeastsD seeds
30.235201 3.241137 1.224206 2.215300 NA -1.646760
salts
-1.225751
> #1(c)
> anova(m1) #Generates the
Analysis of Variance Table
Response: heights
Df Sum Sq Mean Sq F value Pr(>F)
yeastsA 1 16.5675 16.5675 7.2070 0.02291 *
yeastsB 1 1.0838 1.0838 0.4714 0.50793
yeastsC 1 5.9512 5.9512 2.5889 0.13870
seeds 1 7.0225 7.0225 3.0549 0.11107
salts 1 8.6645 8.6645 3.7692 0.08089 .
Residuals 10 22.9880 2.2988
---
Signif. codes: 0 *** 0.001 ** 0.01 * 0.05 . 0.1 1
> #2(a)
> data2 <- read.csv(file="courseworkdata4.csv", head=TRUE, sep=",")
> profit <- data2[, profit ]
> men <- data2[, men ]
> women <- data2[, women ]
> boys <- data2[, boys ]
> girls <- data2[, girls ]
>
> m3 <- lm(profit ~ men + women + boys + girls)
> summary(m3)
Call:
lm(formula = profit ~ men + women + boys + girls)
Residuals:
Min 1Q Median 3Q Max
-164.87 -69.95 16.46 51.73 159.75
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) -1115.702 125.976 -8.856 2.41e-07 ***
men 9.617 3.051 3.152 0.006576 **
women 10.862 2.534 4.286 0.000649 ***
boys 27.145 12.644 2.147 0.048561 *
girls 19.917 10.257 1.942 0.071186 .
---
Signif. codes: 0 *** 0.001 ** 0.01 * 0.05 . 0.1 1
Residual standard error: 97.3 on 15 degrees of freedom
Multiple R-squared: 0.9303, Adjusted R-squared: 0.9117
F-statistic: 50.03 on 4 and 15 DF, p-value: 1.688e-08
> #betahat <- c(-1115.702, 9.617, 10.862, 19.917, 27.145)
> #data2m <- as.matrix(data2)
> #Z <- cbind(c(rep.int(1, 20)), (data2m[, c(2:5)]))
> #ssq <- (1/15)*((t(Z%*%betahat))%*%(Z%*%betahat))
>
> (1/15)*sum((profit-fitted(m3))^2)
[1] 9467.148
>
> #2(b)
> mmen <- lm(profit ~ men)
> mwomen <- lm(profit ~ women)
> mboys <- lm(profit ~ boys)
> mgirls <- lm(profit ~ girls)
>
> summary(mmen)
Call:
lm(formula = profit ~ men)
Residuals:
Min 1Q Median 3Q Max
-356.55 -93.87 12.38 90.34 329.45
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) -864.146 179.766 -4.807 0.000141 ***
men 21.056 2.697 7.806 3.47e-07 ***
---
Signif. codes: 0 *** 0.001 ** 0.01 * 0.05 . 0.1 1
Residual standard error: 160.6 on 18 degrees of freedom
Multiple R-squared: 0.772, Adjusted R-squared: 0.7593
F-statistic: 60.93 on 1 and 18 DF, p-value: 3.47e-07
> summary(mwomen)
Call:
lm(formula = profit ~ women)
Residuals:
Min 1Q Median 3Q Max
-292.230 -70.239 -3.667 109.009 212.795
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) -854.457 139.668 -6.118 8.86e-06 ***
women 18.883 1.889 9.999 8.95e-09 ***
---
Signif. codes: 0 *** 0.001 ** 0.01 * 0.05 . 0.1 1
Residual standard error: 131.4 on 18 degrees of freedom
Multiple R-squared: 0.8474, Adjusted R-squared: 0.839
F-statistic: 99.98 on 1 and 18 DF, p-value: 8.947e-09
> summary(mboys)
Call:
lm(formula = profit ~ boys)
Residuals:
Min 1Q Median 3Q Max
-486.71 -271.25 -96.31 339.62 482.52
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) 425.85 183.31 2.323 0.0321 *
boys 20.47 40.34 0.508 0.6180
---
Signif. codes: 0 *** 0.001 ** 0.01 * 0.05 . 0.1 1
Residual standard error: 334 on 18 degrees of freedom
Multiple R-squared: 0.01411, Adjusted R-squared: -0.04066
F-statistic: 0.2576 on 1 and 18 DF, p-value: 0.618
> summary(mgirls)
Call:
lm(formula = profit ~ girls)
Residuals:
Min 1Q Median 3Q Max
-471.67 -222.46 -58.59 259.69 477.22
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) 189.36 154.03 1.229 0.2348
girls 63.65 27.55 2.310 0.0329 *
---
Signif. codes: 0 *** 0.001 ** 0.01 * 0.05 . 0.1 1
Residual standard error: 295.4 on 18 degrees of freedom
Multiple R-squared: 0.2287, Adjusted R-squared: 0.1858
F-statistic: 5.337 on 1 and 18 DF, p-value: 0.03294
>
> #2(d)
> deviance(mmen)
[1] 464442.4
> deviance(mwomen)
[1] 310741
> deviance(mboys)
[1] 2007946
> deviance(mgirls)
[1] 1570915
>
> anova(m3)
Analysis of Variance Table
Response: profit
Df Sum Sq Mean Sq F value Pr(>F)
men 1 1572237 1572237 166.0729 1.622e-09 ***
women 1 254630 254630 26.8961 0.0001106 ***
boys 1 32110 32110 3.3917 0.0853855 .
girls 1 35696 35696 3.7705 0.0711863 .
Residuals 15 142007 9467
---
Signif. codes: 0 *** 0.001 ** 0.01 * 0.05 . 0.1 1
> summary(m3)
Call:
lm(formula = profit ~ men + women + boys + girls)
Residuals:
Min 1Q Median 3Q Max
-164.87 -69.95 16.46 51.73 159.75
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) -1115.702 125.976 -8.856 2.41e-07 ***
men 9.617 3.051 3.152 0.006576 **
women 10.862 2.534 4.286 0.000649 ***
boys 27.145 12.644 2.147 0.048561 *
girls 19.917 10.257 1.942 0.071186 .
---
Signif. codes: 0 *** 0.001 ** 0.01 * 0.05 . 0.1 1
Residual standard error: 97.3 on 15 degrees of freedom
Multiple R-squared: 0.9303, Adjusted R-squared: 0.9117
F-statistic: 50.03 on 4 and 15 DF, p-value: 1.688e-08
> anova(m1)
Analysis of Variance Table
Response: heights
Df Sum Sq Mean Sq F value Pr(>F)
yeastsA 1 16.5675 16.5675 7.2070 0.02291 *
yeastsB 1 1.0838 1.0838 0.4714 0.50793
yeastsC 1 5.9512 5.9512 2.5889 0.13870
seeds 1 7.0225 7.0225 3.0549 0.11107
salts 1 8.6645 8.6645 3.7692 0.08089 .
Residuals 10 22.9880 2.2988
---
Signif. codes: 0 *** 0.001 ** 0.01 * 0.05 . 0.1 1
> anova(m3)
Analysis of Variance Table
Response: profit
Df Sum Sq Mean Sq F value Pr(>F)
men 1 1572237 1572237 166.0729 1.622e-09 ***
women 1 254630 254630 26.8961 0.0001106 ***
boys 1 32110 32110 3.3917 0.0853855 .
girls 1 35696 35696 3.7705 0.0711863 .
Residuals 15 142007 9467
---
Signif. codes: 0 *** 0.001 ** 0.01 * 0.05 . 0.1 1
> qf(4, 15, 0.95)
[1] NaN
Warning message:
In qf(4, 15, 0.95) : NaNs produced
> qf(0.95, 4, 15)
[1] 3.055568
> summary(m3)
Call:
lm(formula = profit ~ men + women + boys + girls)
Residuals:
Min 1Q Median 3Q Max
-164.87 -69.95 16.46 51.73 159.75
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) -1115.702 125.976 -8.856 2.41e-07 ***
men 9.617 3.051 3.152 0.006576 **
women 10.862 2.534 4.286 0.000649 ***
boys 27.145 12.644 2.147 0.048561 *
girls 19.917 10.257 1.942 0.071186 .
---
Signif. codes: 0 *** 0.001 ** 0.01 * 0.05 . 0.1 1
Residual standard error: 97.3 on 15 degrees of freedom
Multiple R-squared: 0.9303, Adjusted R-squared: 0.9117
F-statistic: 50.03 on 4 and 15 DF, p-value: 1.688e-08
> qt(0.99, 15)
[1] 2.60248
> qt(0.95, 15)
[1] 1.75305
> mmen <- lm(profit ~ men)
> mwomen <- lm(profit ~ women)
> mboys <- lm(profit ~ boys)
> mgirls <- lm(profit ~ girls)
>
> summary(mmen)
Call:
lm(formula = profit ~ men)
Residuals:
Min 1Q Median 3Q Max
-356.55 -93.87 12.38 90.34 329.45
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) -864.146 179.766 -4.807 0.000141 ***
men 21.056 2.697 7.806 3.47e-07 ***
---
Signif. codes: 0 *** 0.001 ** 0.01 * 0.05 . 0.1 1
Residual standard error: 160.6 on 18 degrees of freedom
Multiple R-squared: 0.772, Adjusted R-squared: 0.7593
F-statistic: 60.93 on 1 and 18 DF, p-value: 3.47e-07
> summary(mwomen)
Call:
lm(formula = profit ~ women)
Residuals:
Min 1Q Median 3Q Max
-292.230 -70.239 -3.667 109.009 212.795
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) -854.457 139.668 -6.118 8.86e-06 ***
women 18.883 1.889 9.999 8.95e-09 ***
---
Signif. codes: 0 *** 0.001 ** 0.01 * 0.05 . 0.1 1
Residual standard error: 131.4 on 18 degrees of freedom
Multiple R-squared: 0.8474, Adjusted R-squared: 0.839
F-statistic: 99.98 on 1 and 18 DF, p-value: 8.947e-09
> summary(mboys)
Call:
lm(formula = profit ~ boys)
Residuals:
Min 1Q Median 3Q Max
-486.71 -271.25 -96.31 339.62 482.52
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) 425.85 183.31 2.323 0.0321 *
boys 20.47 40.34 0.508 0.6180
---
Signif. codes: 0 *** 0.001 ** 0.01 * 0.05 . 0.1 1
Residual standard error: 334 on 18 degrees of freedom
Multiple R-squared: 0.01411, Adjusted R-squared: -0.04066
F-statistic: 0.2576 on 1 and 18 DF, p-value: 0.618
> summary(mgirls)
Call:
lm(formula = profit ~ girls)
Residuals:
Min 1Q Median 3Q Max
-471.67 -222.46 -58.59 259.69 477.22
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) 189.36 154.03 1.229 0.2348
girls 63.65 27.55 2.310 0.0329 *
---
Signif. codes: 0 *** 0.001 ** 0.01 * 0.05 . 0.1 1
Residual standard error: 295.4 on 18 degrees of freedom
Multiple R-squared: 0.2287, Adjusted R-squared: 0.1858
F-statistic: 5.337 on 1 and 18 DF, p-value: 0.03294
>
> deviance(mmen)
[1] 464442.4
> deviance(mwomen)
[1] 310741
> deviance(mboys)
[1] 2007946
> deviance(mgirls)
[1] 1570915
>