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GABAergic synapses are formed without the


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involvement of dendritic protrusions


Corette J Wierenga, Nadine Becker & Tobias Bonhoeffer

Synaptogenesis and the role of dendritic protrusions in this process are well studied in glutamatergic synapses. Much less is
known about the formation of GABAergic synapses, which are located predominantly on the dendritic shaft. We used genetically
labeled interneurons in mature hippocampal slice cultures and two-photon laser-scanning microscopy to examine contact
formation between GABAergic axons and the dendrites of CA1 pyramidal cells. Dendritic protrusions distinguished and selected
between glutamatergic and GABAergic boutons. In contrast with contacts with glutamatergic boutons, which can be long lasting,
the contacts of dendritic protrusions with GABAergic boutons were always short lived. Similarly, the contacts made by GABAergic
axonal protrusions were always transient. New putative GABAergic synapses were formed exclusively by new boutons appearing at
pre-existing axon-dendrite crossings without the involvement of any dendritic or axonal protrusions. These findings imply that
fundamentally different mechanisms underlie the generation of GABAergic and glutamatergic synapses.

Chemical synapses are the key connective elements in neuronal net- serve to guide presynaptic axons to the dendritic shaft, thereby
works. They are not only crucial for information processing, but their mediating the formation of shaft synapses5,6. However, it is unresolved
plasticity also endows the brain with its outstanding capacity for to date how often this occurs and whether alternative scenarios,
adaptation to the environment. Understanding synapses and how possibly involving a more active role of the GABAergic axon, are also
they are formed is therefore a fundamentally important task in important in the formation of GABAergic contacts.
neuroscience. So far, the majority of studies have focused on the We used high-resolution two-photon imaging of genetically labeled
formation of glutamatergic synapses, whereas the formation of the GABAergic neurons and their postsynaptic counterparts to examine
other major type of synapse in the brain, which uses the inhibitory how new GABAergic shaft synapses are formed in the CA1 area of
transmitter GABA, remains less examined, in spite of the fact that organotypic hippocampal cultures. We found that new GABAergic
GABAergic synapses form 10–20% of all synapses in the brain and are boutons, probably indicating new GABAergic synapses, were formed
indispensable for the proper and stable functioning of the brain1. exclusively at pre-existing axon-dendrite crossings, without the in-
Glutamatergic synapses on excitatory neurons in the hippocampus volvement of either dendritic or axonal protrusions. This indicates that
occur almost exclusively on dendritic spines2,3. It is thought that these there are fundamentally different mechanisms for the formation of
spines and their precursors, dendritic filopodia, are actively involved in glutamatergic and GABAergic synapses.
the formation of new glutamatergic synapses. Dendrites grow small
protrusions that make contact with presynaptic axons and boutons4–8. RESULTS
Only a subset of these initial contacts is selected through filopodial To visualize GABAergic axons, we used hippocampal slice cultures
signaling and forms mature, functional synapses9–11. During further of GAD65-GFP mice. In these mice, 30–50% of GABAergic inter-
maturation of a new synaptic contact, the dendritic protrusion neurons in the hippocampus express GFP at embryonic ages and
shrinks as its head expands, turning into a mature spine4,12,13. In this well into adulthood17. Dendrites of 2–5 CA1 pyramidal neurons
scenario, dendritic filopodia precede fully mature spines and it has were filled with Alexa Fluor 594 through a patch pipette before
been shown that long, thin dendritic protrusions that are reminiscent imaging. This resulted in a sparse overlap between GFP-labeled
of filopodia can have (sometimes even multiple) synaptic contacts5,6,14. GABAergic axons and Alexa 594–labeled dendrites, allowing the
Although the above is probably not the only way to form new synapses contacts between GABAergic axons and boutons with labeled dendritic
on spines15, the studies cited above provide ample evidence of a role for structures to be resolved in detail with two-photon laser-scanning
outgrowing protrusions in the formation of glutamatergic synapses. microscopy (Fig. 1a,b). We took high-resolution image stacks every
In contrast to glutamatergic synapses, GABAergic synapses are 30 min for a total period of 3–6 h and examined the formation
usually not located on spines but are found directly on the dendritic of contacts between GABAergic axons and apical dendrites of CA1
shaft1,3,16. It has been suggested that dendritic protrusions can also pyramidal neurons. In total, we analyzed the time-lapse series

Max Planck Institute of Neurobiology, Cellular and Systems Neurobiology, Am Klopferspitz 18, 82152 Martinsreid, Germany. Correspondence should be addressed to C.J.W.
(wierenga@neuro.mpg.de).
Received 19 March; accepted 30 June; published online 24 August 2008; doi:10.1038/nn.2180

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Figure 1 Imaging GABAergic synapses in


a b GAD65-GFP slice cultures. (a) Maximal intensity
projection image of the CA1 region, showing
GFP-labeled GABAergic interneurons (green) and
Alexa 594–labeled pyramidal neurons (red).
(b) A single section from an image stack (raw
data) from the boxed area indicated in a showing
clear labeling of GABAergic axons and boutons
and their overlap with labeled dendrites. (c,d) Two
examples of synaptic contacts (white arrows)
between GABAergic boutons (green) and labeled
© 2008 Nature Publishing Group http://www.nature.com/natureneuroscience

dendrites (red). Single sections of two-photon


image stacks are shown to the left with the
corresponding confocal sections after
immunofluorescence staining for gephyrin (blue)
30 µm 10 µm
to the right. Areas with all three labels appear
white. In these images (but nowhere else), two-
c d GFP GFP photon images were filtered to allow for better
Alexa 594 Biocytin comparison with the confocal images.
Gephyrin

Transient contacts are formed by


GFP
GFP
Biocytin
protrusions
1 µm 1 µm
Alexa 594 Gephyrin In principle, new GABAergic synapses could
Live imaging Post hoc immunostaining Live imaging Post hoc immunostaining be formed with or without the involvement of
dendritic or axonal protrusions. During the
3–6-h imaging period, we observed many
of 21 image stacks, in which we observed 4400 pre-existing, stable dendritic protrusions on labeled dendrites forming, retracting or
contacts (Table 1). changing size and/or shape. In 19 cases, a dendritic protrusion could
From the high-resolution images, we could clearly identify be seen making contact with a GFP-labeled GABAergic bouton (two
the locations where a GABAergic bouton was in contact with a labeled examples are shown in Fig. 2a,b). In the first example, a dendritic
dendrite (see Methods for our criteria). Although synapses require protrusion (Fig. 2a) grew out from the shaft and touched the
the presence of an axonal bouton, axonal varicosities or swellings GABAergic bouton of a neighboring axon (Fig. 2a). At the next time
do not necessarily imply the presence of synapses18,19. To examine point, 30 min later, the dendritic protrusion had almost completely
whether the physical contacts between GABAergic boutons and retracted to the shaft. In the second example (Fig. 2b), the dendritic
dendrites corresponded to synapses, we carried out post hoc immu- protrusion grew out from a spine that was present during the entire
nostaining on contacts between boutons and dendrites that were imaging period. As in the first example (Fig. 2a), the contact between
previously identified in two-photon image stacks. We found that the dendritic protrusion and the GABAergic bouton lasted for only a
80% of the contacts (56 out of 70, 5 slices) that were classified as single time point (complete time series for these two examples are
making physical contact on the basis of the two-photon images shown in Supplementary Fig. 1 online).
did indeed show postsynaptic gephyrin staining, indicating that the The majority of contacts between a new dendritic protrusion and a
majority of physical contacts represent GABAergic synapses (Fig. 1c,d). GABAergic bouton (12 out of 19) were present at only one time point
For 10 of the 14 gephyrin-negative contacts, the bouton showed (0.5 h) and none lasted longer than 1.5 h. There was no difference in the
gephyrin staining that did not overlap with the labeled dendrite, lifetime of the contact between protrusions that grew directly from the
suggesting that the GABAergic bouton made a synapse to a neighbor- shaft (13 out of 19) and protrusions that grew from stable spines (6 out
ing unlabeled structure. Using the mirror image of the gephyrin of 19). These observations indicate that dendritic protrusions do make
channel reduced the number of gephyrin-positive contacts from 80% contact with GABAergic boutons in a similar fashion to glutamatergic
to 47%, indicating that gephyrin staining was specific (P o 0.001, boutons. However, these contacts were always transient, and therefore,
w2 test). We also examined locations where a bouton was close to a
labeled dendrite, but the overlap between the red and green channel Table 1 Number of observations
in the two-photon images was too small to be classified as a contact by Pre-existing stable boutons 423 (78%)
our criteria. However, 19% of these ‘noncontacts’ showed gephyrin Transient contacts 44
staining (10 out of 54, 5 slices). This indicates that our criteria for Dendritic protrusion contacts GABAergic bouton 19 (3.5%)
identifying GABAergic synapses from our two-photon images might Axonal protrusion contacts labeled dendrite 25 (4.6%)
lead to an error in assessing synaptic contacts of no more than B20% New boutons 42
in both directions, which should be unproblematic for the conclusions Transient bouton appears at crossing 30 (5.5%)
presented below. Stable bouton appears at crossing 12 (2.2%)
From the immunostaining experiments, we therefore inferred that Lost boutons 12
at least 80% of boutons contacting a dendrite, identified on the Bouton disappears at crossing 10 (1.8%)
basis of the two-photon images, represent actual synaptic contacts. Dendrite retraction 2 (0.4%)
The locations where we observed a GABAergic axon crossing Contact rearrangements 24
or touching a dendrite, but which lacked a bouton, are probably New contact by movement of bouton or dendrite 10 (1.8%)
nonsynaptic contact points18,19 and will be referred to as axon- Lost contact by movement of bouton or dendrite 14 (2.6%)

dendrite crossings. Data from 21 experiments with imaging durations of 3–6 h.

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Figure 2 Transient contacts by dendritic and axonal protrusions. Three-


a 0h 0h b dimensional representations (left) and single sections (right) of two-photon
image stacks at the indicated time points. GABAergic axons are shown in
green (GFP) and dendrites in red (Alexa 594). Overlap (yellow) of the red
and green channels indicates contact between the axonal and dendritic
0.5 h 0.5 h structures. Some nonrelevant structures that are visible in the single sections
were removed from the three-dimensional reconstructions for clarity. Three-
1h 1h
dimensional reconstructions were made for visualization purposes only;
DP
analysis was always done on individual image sections. (a) A dendritic
DP
protrusion (DP) grew out from the dendritic shaft and made transient contact
with a GABAergic bouton. (b) A DP emerged from a stable spine and made
© 2008 Nature Publishing Group http://www.nature.com/natureneuroscience

1h 1h
transient contact with a nearby GABAergic bouton. (c) An axonal protrusion
(AP) grew out from a GABAergic bouton that was contacting the labeled
1.5 h 1.5 h
dendrite. The protrusion made contact with the dendrite twice (see
Supplementary Fig. 1), but the contact was not present at the end of the
imaging period. (d) An AP grew out and formed a transient contact with
the labeled dendrite. Both boutons did not form contacts with the labeled
1.5 h 1.5 h
dendrite. Scale bars represent 1 mm.

Red dendrites of CA1 pyramidal cells dendritic or axonal protrusion makes contact
Green GABAergic axons/boutons protrusion without contact protrusion (and its contact) was not present the next day and the axon
c d 0h 0h and dendrite appeared to be unchanged. This shows that, even in our
longest-lasting contact between axonal protrusion and dendritic shaft,
the contact did not seem to be transformed into a stable synapse. These
0h 0h
observations suggest that axonal protrusions grow out and make
transient contacts with the dendritic shaft, but they are not transformed
3h 3h
into long-lasting, stable contacts.
AP

New stable boutons are formed on dendritic shafts


1.5 h 1.5 h In addition to transient contacts by protrusions, we also observed long-
4.5 h 4.5 h lasting changes in GABAergic contacts during the 3–6-h imaging
AP
AP period (Fig. 3). At locations where a labeled GABAergic axon crossed
a labeled dendritic shaft, a new bouton occasionally appeared that then
3h 3h stayed present for the rest of the imaging period. We observed this in 12
5.5 h 5.5 h
cases (Figs. 3a,b and 4a). The appearance of a new bouton did not seem
to be influenced by the presence (4/12; Fig. 3a) or absence (8/12;
Fig. 3b) of a neighboring bouton that was already contacting the
dendritic shaft (complete time series of the two examples in Fig. 3 are
5.5 h 5.5 h
shown in Supplementary Fig. 2 online).
Not all new GABAergic boutons were stable from their first appear-
in contrast with glutamatergic synapses, the formation of stable ance. Some boutons were present for only a short period (Figs. 3c and
GABAergic synapses is probably not mediated by dendritic protrusions. Fig. 4b), whereas others disappeared and reappeared during the
We also looked at the outgrowth of axonal protrusions from labeled imaging period (Figs. 3d and Fig. 4b). We observed 30 of these
GABAergic axons during the 3–6-h imaging period. Consistent with transient boutons. In some cases, the new bouton appeared to make
previous reports20–22, these were usually smaller and shorter lived than small movements to and from the dendrite before and after making
dendritic protrusions and occurred exclusively at boutons. In 25 cases, contact (Fig. 3c and Supplementary Fig. 2). In other cases, the new
we observed an axonal protrusion touching a labeled dendrite (two bouton appeared or disappeared at the location of the contact without
examples are shown in Fig. 2c,d; complete time series for these two noticeable movement (Fig. 3d).
examples are shown in Supplementary Fig. 1). In the first example The detailed time courses of the appearance of individual boutons
(Fig. 2c), a GABAergic bouton contacted the labeled dendrite during on axon-dendrite crossings clearly shows the difference between
the entire imaging period. After 1.5 h, an axonal protrusion (Fig. 2c,d) boutons that were stable from their first appearance (Fig. 4a) and
grew out from the bouton along the dendritic shaft of the labeled transient boutons, which disappeared and sometimes reappeared
neuron but retracted before the end of the imaging period. The axonal during the imaging period (Fig. 4b). These observations indicate that
protrusion in the second example (Fig. 2d) grew from a bouton that stable GABAergic boutons can be formed over a period of several hours
was not in contact with the labeled dendrite. It appeared to form a new on a similar time scale as has been reported for the formation of
bouton on contact with the dendrite (t ¼ 4.5 h). As with the first glutamatergic synapses23–25. However, in contrast with glutamatergic
example, however, the contact did not last. In all cases where an axonal contacts, dendritic or axonal protrusions do not seem to be involved in
protrusion made contact with a labeled dendrite, the contact was only the establishment of long-lasting contacts. Instead, new stable GABAer-
transient (o2.5 h for all but one). There was no difference in lifetime of gic boutons appear at pre-existing axon-dendrite crossings.
the contact between small protrusions (such as in Fig. 2c; 17 out of 26) Although the majority of inhibitory synapses in the brain are located
or longer filopodia-like protrusions (Fig. 2d; 9 out of 26). Only once directly on the dendritic shaft, some of them occur on dendritic
did we observe a new contact by an axonal protrusion that lasted until spines3,26,27. In hippocampal slice cultures of GAD65-GFP mice, in
the end of the imaging period (4.5 h). In this case, we could image the which only a subset of GABAergic interneurons are labeled, 21% of the
same contact the following day (see below). We found that the axonal labeled GABAergic contacts that were present before and during the

1046 VOLUME 11 [ NUMBER 9 [ SEPTEMBER 2008 NATURE NEUROSCIENCE


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Figure 3 New GABAergic boutons appear at axon-dendrite crossings. Three-


a 0h 0h b 0h 0h dimensional representations (left) and single sections (right) of two-photon
microscopy image stacks at the indicated time points (see Fig. 2 for details).
(a) A stable bouton (SB) appeared at an axon-dendrite crossing and stayed in
contact with the dendrite for the rest of the imaging period. The lower bouton
formed a stable contact with the dendrite for the entire imaging period.
1h 1h 2h 2h (b) An SB appeared at an axon-dendrite crossing at t ¼ 2.5 h and stayed in
SB contact with the dendrite for the rest of the imaging period. (c) A transient
appearance of a bouton (TB) at an axon-dendrite crossing. (d) A TB at an
axon-dendrite crossing appeared, disappeared and reappeared several times.
Scale bars represent 1 mm.
© 2008 Nature Publishing Group http://www.nature.com/natureneuroscience

2.5 h 2.5 h
4h 4h
SB SB quantified the duration of each episode of contact or bouton appear-
ance, the number of repeated contacts or bouton appearances during
the imaging period, and the total percentage of the imaging period in
5h 5h 4h 4h which the contact or bouton was present. The durations for all types of
SB transient events were fairly similar and transient events were much
SB shorter compared to the time a new stable bouton was present (Fig. 4c).
Notably, repeated appearance and disappearance of a transient bouton
Red dendrites of CA1 pyramidal cells stable or transient bouton with contact
at an axon-dendrite crossing was fairly common, whereas contacts
Green GABAergic axons/boutons bouton without contact made by protrusions, either dendritic or axonal, were usually made
c d 0h only once during the imaging period (Fig. 4d). When a transient
bouton appeared at an axon-dendrite crossing, it was present, on
TB
average, for almost 40% of the total imaging period, whereas a transient
0h 0h 0h
contact made by a dendritic protrusion was present for o20% of the
1h time (Fig. 4e). These data support the notion that new GABAergic
synapses are formed by the occurrence of a new GABAergic bouton at
an existing axon-dendrite crossing, whereas contacts made by protru-
1h
sions, either axonal or dendritic, have a very low probability of being
0.5 h 0.5 h
2h transformed into stable synapses.
TB
Long-lasting contacts
TB We next examined whether GABAergic boutons that were formed
2h 2h 2h
3.5 h
during the imaging period persisted into the next day. After a night in
the incubator, the Alexa 594 dye was often cleared by the CA1
pyramidal neurons and had gathered mostly in the soma, leaving
only weakly staining in the dendrites. In five experiments, the dendrites
4h 4h 3.5 h
4h
were bright enough to image the same region with sufficient detail the
next day (examples are shown in Supplementary Fig. 3 online). The
TB GABAergic axons and boutons were as bright as the day before and had
largely unchanged morphology.
4h
Of the 86 contacts between GABAergic boutons and labeled dendrites
that were present before and during the entire imaging period on the
entire imaging period were located on spines (90 out of 423 pre-existing first day, 81 were also observed the next day (94%), corroborating their
contacts). We asked whether the appearance of a new bouton prefer- classification as pre-existing stable contacts. Two stable boutons had
entially occurred at axons crossing the dendritic shaft or whether they formed during the experiment at an axon-dendrite crossing that had
also occurred at spines. Two of the 12 new stable boutons and 5 of the 30 stayed present for the rest of the imaging period on the first day. Both
transient boutons appeared at dendritic spines. The fraction of new boutons were still present and in contact with the red dendrite the
boutons appearing on spines versus shafts was not significantly different following day, indicating that the newly formed boutons were indeed
from the fraction of pre-existing GABAergic contacts made on spines long lasting. Of the 15 boutons that qualified as transient on the first
(P 4 0.5, w2 test). This suggests that the formation of new GABAergic day, seven were present the next day at the location where the bouton
synapses occurs through the appearance of a new bouton at pre-existing had first occurred. In the other eight cases, the axon-dendrite crossing
axon-dendrite crossings, irrespective of whether the new bouton is was still present, but a bouton could not be discerned. This suggests that
made on a spine or on the dendritic shaft of the postsynaptic neuron. at least a subset of transient boutons is transformed over time into stable
boutons, possibly forming synapses. Of the transient contacts made by
Lifetime of transient contacts and new boutons 11 axonal protrusions and 3 dendritic protrusions that were observed on
As described above, we observed three types of transient events. the first day, none were present the next day and the axons and dendrites
Transient contacts were initiated by the dendrite through the out- appeared to be unchanged (see Table 2). Although it is possible that
growth of a dendritic protrusion that touched a GABAergic bouton but small dendritic protrusions were missed as a result of the weak dendrite
could also be initiated by the outgrowth of an axonal protrusion labeling on the second day, these observations are consistent with the
contacting the dendrite. Furthermore, boutons transiently appeared idea that transient contacts formed by axonal or dendritic protrusions
at an existing axon-dendrite crossing. For each of these events, we are generally not transformed into GABAergic synapses.

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Figure 4 Lifetime of transient contacts and boutons. (a,b) Time course of new
a Stable boutons b Transient boutons stable (a, n ¼ 12) and transient boutons (b, n ¼ 30). Individual boutons are
1.0 1.0
represented in different colors, and the average time course is given by the
Normalized overlap

Normalized overlap
0.8 0.8 thick black curve. The number of overlapping pixels between bouton and
0.6 0.6 shaft (normalized to maximum overlap) is plotted for all time points, aligned
0.4 0.4 to the time when the bouton (first) appeared. New stable boutons always
0.2
stayed in contact with the shaft, whereas transient boutons disappeared and
0.2
sometimes reappeared at later time points. In some experiments, we
0.0 0.0
–3 –2 –1 0 1 2 3 4 5 h 1d –3 –2 –1 0 1 2 3 4 5 h 1d examined the boutons on the day following the imaging period (1 d, see also
Time Time Table 2). (c) Average duration of single episodes of contact by dendritic and
axonal protrusions and transient and stable bouton occurrences. (d) Number
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Repeated contacts
c Episode duration d or appearances e Total contact time of repeated contacts or bouton appearances. (e) Percentage of the imaging

Percentage of total imaging period


4.5 *** 80% *** period that the transient contact or bouton was present. The numbers at
***
4.0
2
70% the base of the bars reflect the number of observations. * P o 0.05,
3.5 60% *** P o 0.001, ANOVA with post hoc Tukey HSD test. Error bars reflect s.e.
3.0 ***
50% *
Time (h)

2.5
40% after contacting glutamatergic boutons also occurred, similar to pro-
2.0
30% trusions contacting GABAergic boutons. Taken together, these data
1.5
20%
1.0 suggest that some, but not all, of the contacts with glutamatergic
0.5 10%
19 25 30 12 19 25 30 12 19 25 30 12
boutons were transformed into stable glutamatergic spine contacts,
0.0 1 0%
DP AP TB SB DP AP TB SB DP AP TB SB consistent with the proposed role of dendritic protrusions in the
formation of glutamatergic spine synapses4–6,9. Our finding that
dendritic protrusions distinguish between GABAergic and glutamater-
Lifetime of protrusions gic boutons is further supported by the individual time courses of
We noticed that dendritic protrusions often retracted soon after contact formation by dendritic protrusions (Fig. 5d,e). These data
contacting a GABAergic bouton, whereas axonal protrusions appeared strongly suggest that, although dendritic protrusions are important in
to live longer. We examined whether this was the result of a general the formation of glutamatergic spine contacts, contacts between
difference in lifetime between dendritic and axonal protrusions or dendritic protrusions and GABAergic boutons are short lived and do
whether the transient contact with the GABAergic bouton or dendritic not normally result in new GABAergic synapses.
shaft, respectively, affected the lifetimes of the protrusions. We there-
fore measured the lifetime of an arbitrarily chosen population of newly New boutons can form synapses in several hours
emerging (that is, not present at the first time point) axonal and The results described above suggest that new GABAergic boutons
dendritic protrusions that were not contacting any labeled structure. appearing at pre-existing axon-dendrite crossings may be important
Axonal protrusions that had contacted a labeled dendrite had a range for establishing new GABAergic synapses. However, our two-photon
of lifetimes that was indistinguishable from the range of lifetimes of the data show anatomical apposition as well as a morphological change
population of arbitrarily chosen GABAergic axonal protrusions (Fig. 5a). into a bouton, but they do not conclusively demonstrate that these new
For dendritic protrusions, the picture was very different. Although the boutons actually form functional synapses, nor do they indicate at what
arbitrarily chosen dendritic protrusions included both short-lived and time scale these new synapses form. For glutamatergic synapses, it has
long-lived protrusions, all dendritic protrusions that contacted a been shown that the presynaptic active zone can be functional in
GABAergic bouton had short lifetimes (Fig. 5b). This suggests that 30–60 min after the initial contact between axon and dendrite and that
only short-lived dendritic protrusions contact GABAergic boutons or, postsynaptic scaffold proteins and receptors are recruited soon there-
somewhat more likely, that contacting a GABAergic bouton shortens the after23,25,29,30 (but also see refs. 7,8). At present, detailed information
lifetime of a dendritic protrusion. Alternatively, some of the arbitrarily on the time course of the recruitment of synaptic molecules to new
chosen protrusions contacted something that prolonged their lifetimes. GABAergic synapses is almost completely lacking31–33.
The arbitrarily chosen population of dendritic protrusions probably To start addressing this issue, we carried out time-lapse imaging of
contacts a rather inhomogeneous selection of structures, including GFP-labeled GABAergic axons, followed by post hoc immunostaining for
GABAergic and glutamatergic axons and boutons, glial processes, and GABAergic pre- and postsynaptic markers, vesicular GABA transporter
other dendrites28. We therefore tested more specifically whether the (VGAT) and gephyrin (Fig. 6). For comparison, we immunostained slice
lifetime of dendritic protrusions depends on whether they contact a cultures without previous time-lapse imaging and found that the vast
glutamatergic or GABAergic bouton. To this end, we labeled glutama- majority of GABAergic boutons contained VGAT and were associated
tergic axons from CA3 neurons with a bolus-loading technique (N.B., with gephyrin (Fig. 6c,d). In fact, only 2.4% of GFP-positive boutons
C.J.W., Fonseca, R., T.B. and Nägerl, U.V., unpublished data). In these
experiments, we observed 20 dendritic protrusions growing from Table 2 Contacts that were present the following day
labeled CA1 pyramidal neurons that contacted labeled glutamatergic
Pre-existing stable boutons 81 of 86 (94%)
boutons. In contrast with the protrusions contacting GABAergic
Transient contacts
boutons, a substantial fraction of these protrusions had lifetimes that
Dendritic protrusions 0 of 3* (0%)*
were greater than 2 h (Fig. 5b). In fact, in 5 of the 20 cases, the Axonal protrusions 0 of 11 (0%)
protrusion was still present and contacting the glutamatergic bouton at New boutons
the last imaging time point (Fig. 5c). In many cases, the dendritic Transient boutons 7 of 15 (47%)
protrusions stayed in contact for much longer than was observed for Stable boutons 2 of 2 (100%)
dendritic protrusions contacting a GABAergic bouton. Nevertheless,
Data from 5 experiments. *It is unlikely but cannot be completely excluded, that small
not all contacts between dendritic protrusions and glutamatergic dendritic protrusions might have been missed as a result of the weak dendrite labeling on
boutons were long lasting. Retraction of dendritic protrusions shortly the second day.

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a Axonal protrusions b Dendritic protrusions c Glutamatergic bouton Figure 5 Lifetime of dendritic and axonal
protrusions. (a) The mean (upper) and cumulative
* 0 hr 0 hr
1.6 1.6 distributions (lower) of the lifetimes of axonal
1.4 1.4 protrusions that contacted a labeled dendrite were
1.2 1.2 not different from those of arbitrarily selected
Lifetime (h)

Lifetime (h)
1.0 1.0
0.8 0.8 axonal protrusions. (b) The mean lifetime (upper)
0.6 0.6 1.5 hr 1.5 hr of dendritic protrusions that contacted a
0.4 0.4 DP GABAergic bouton was significantly shorter than
0.2 25 85 0.2 19 110
0.0 0.0 that of the arbitrarily chosen dendritic protrusions
Contacting Arbitrarily Contacting Arbitrarily (P ¼ 0.03, Mann-Whitney U test). The cumulative
labeled dendrite chosen GABAergic bouton chosen
distributions also clearly show the shorter
© 2008 Nature Publishing Group http://www.nature.com/natureneuroscience

2 hr 2 hr
DP lifetimes of GABA-contacting protrusions (lower,
1.0 1.0 gray solid lines; P o 0.01, w2 test). Dendritic
Cumulative probability

Cumulative probability

0.8 0.8 protrusions that contacted a glutamatergic bouton


showed a much broader range of lifetimes, with
0.6 0.6 5 hr 5 hr
Contacting GABAergic
some short- and some long-lived protrusions
DP
0.4
Contacting labeled
0.4 bouton (lower, gray dotted line; significantly different from
Arbitrarily chosen
0.2 dendrite 0.2 gray solid line, P o 0.001, w2 test). (c) Example
Contacting
Arbitrarily chosen glutamatergic bouton of a long-lasting contact made by a dendritic
0.0 0.0
0 1 2 3 4 5 6 0 1 2 3 4 5 6 Dendritic protusion makes contact protrusion and a glutamatergic bouton. The
Lifetime (h) Lifetime (h) Protrusion without contact dendritic protrusion and the contact were still
present at the end of the imaging period. Scale
d Protrusions contacting GABAergic boutons e Protrusions contacting glutamatergic boutons bar represents 1 mm. (d,e) Time course of contact
1.0 1.0
formation for dendritic protrusions with GABAergic
(d, n ¼ 19) and glutamatergic (e, n ¼ 20)
Normalized overlap

Normalized overlap

0.8 0.8 boutons. Individual protrusions are represented in


0.6 0.6 different colors and the average time course is
given by the thick black curve. The numbers of
0.4 0.4
overlapping pixels between protrusion and bouton
0.2 0.2 (normalized to maximum overlap) are plotted for
all time points, aligned to the time of first contact.
0.0 0.0
Contacts with GABAergic boutons were always
–3 –2 –1 0 1 2 3 4 5 –3 –2 –1 0 1 2 3 4 5
Time (h) Time (h)
short lived, whereas longer-lived and repeated
contacts occurred with glutamatergic boutons.

(total 1,317 boutons, 12 slices) lacked a synaptic marker. This indicates Axon-dendrite crossings
that, in general, GABAergic boutons reliably reflect GABAergic synapses. Our data show that new GABAergic synapses are formed at pre-existing
During 3 h of time-lapse imaging, most GABAergic boutons were axon-dendrite crossings. Taking this result into consideration, a flexible,
present for the entire imaging period and only 5–10% of boutons were modifiable GABAergic system would require a considerable fraction of
plastic, that is, appeared or disappeared. Post hoc immunostaining a axon-dendrite crossings that do not (yet) have synaptic contacts so that
bouton that appeared at t ¼ 1.5 h during the imaging period (Fig. 6a,b) new synapses can still be formed when needed. We therefore estimated
showed that, at the time of fixation (2 h after first appearance), the new the percentage of GABAergic axon-dendrite crossings with and without
bouton (yellow circle) had accumulated VGAT, while the postsynaptic boutons. We found that only 42 ± 8% (mean ± s.d.; 21 slice cultures) of
scaffolding protein gephyrin was not (yet) present (Fig. 6b). Stable axon-dendrite crossings contained one or more boutons. This indicates
boutons on the same and nearby axons (blue circles) were immuno- that there are still a substantial number of available axon-dendrite
positive for VGAT and gephyrin (Fig. 6b), presumably reflecting stable crossings where new GABAergic contacts can be formed.
GABAergic synapses. Notably, the percentage of axon-dendrite crossings with boutons was
When we examined multiple new boutons that appeared at various similar in all slices (range of 30–56%, with one exception of 21%; 21
intervals before fixation, we found that the majority of new boutons slices) and did not depend on the total number of crossings. This
acquired VGAT in the first hour after appearance (all time points are suggests that the fraction of axon-dendrite crossings that have synapses
different from background, P o 0.01, w2 test), whereas gephyrin may be tightly controlled by the GABAergic system so that the
accumulated at a slower rate (Fig. 6c). We found that B70% of new generation of new synaptic contacts is always permitted.
boutons were immunopositive for both synaptic markers 3 h after their
first appearance, presumably reflecting new GABAergic synapses DISCUSSION
(Fig. 6d). At locations where boutons had disappeared during the The overwhelming majority of studies on synapse formation in the
two-photon imaging period (at various intervals before fixation), the CNS have been carried out on glutamatergic synapses. However,
presynaptic protein VGAT was not present above background levels, besides the greater part of synapses, which are glutamatergic and
whereas postsynaptic gephyrin could occasionally be found up to 1 h often located on spines, a substantial fraction of synapses in the
after the bouton disappeared (data not shown). This might indicate that brain are GABAergic. These synapses are located mostly (although
presynaptic changes precede postsynaptic alterations during GABAergic not exclusively) on dendritic shafts. Our experiments were conducted
synapse formation and disassembly, but more detailed studies will be in vitro on a specific subset of GABAergic neurons. Therefore, care needs
needed to fully resolve these processes. Notably, our findings indicate to be taken before generalizing these results to all GABAergic axons and/
that a large fraction of newly appearing GABAergic boutons forms or the in vivo situation. Nevertheless, we demonstrate that, at least in the
new GABAergic synapses with a time constant on the order of CA1 region of the hippocampus and under our experimental circum-
a few hours. stances, GABAergic synapses are formed via a fundamentally different

NATURE NEUROSCIENCE VOLUME 11 [ NUMBER 9 [ SEPTEMBER 2008 1049


ARTICLES

a Figure 6 New GABAergic boutons form synapses.


(a) Time lapse two-photon images (projection of
three z sections) showing the appearance of a new
bouton (yellow circle) on a GFP-expressing
GABAergic axon. (b) Post hoc immunostaining
(projection of three z sections) of the same region
as in a. The dashed box is enlarged on the right
side (merge) and the separate channels are
0h 0.5 h 1h 1.5 h 2h 2.5 h 3h
shown. The new bouton (yellow circle) was
b Merge GFP VGAT Geph immunopositive for VGAT (blue), but not for
gephyrin (red). Stable boutons (blue circles) were
© 2008 Nature Publishing Group http://www.nature.com/natureneuroscience

immunopositive for both markers (appearing white


in merged image). Scale bars represent 1 mm.
(c) Left, percentage of new boutons that were
immunopositive for VGAT (black bars) and
gephyrin (gray bars), grouped according to their
lifetime before fixation. Right, percentage of
boutons that were immunopositive for VGAT and
No marker
c VGAT
Gephyrin d One marker
gephyrin in slices in which no previous time lapse
Two markers imaging was performed. Background staining
100% 100% levels of boutons were determined after horizontal
or vertical reflection of the VGAT and gephyrin
80% 80% channels (‘randomized’). (d) Same data as in c,
*** but the bars indicate the number of synaptic
60% 60% markers that were present at each bouton.
*** * P o 0.05, *** P o 0.001, w2 test, difference
40% 40% from background. The numbers at the base of the
*
bars reflect the number of boutons examined.
20% 20%

27 21 15 1317 575 27 21 15 1317 575


0% 0% Dendritic protrusions that contacted
0.5–1 h 1.5–2 h 2.5–3 h No Randomized 0.5–1 h 1.5–2 h 2.5–3 h No Randomized
Time present time lapse Time present time lapse GABAergic boutons had substantially shorter
before fixation (h) before fixation (h) lifetimes than protrusions that contacted glu-
tamatergic boutons. This suggests that only
short-lived protrusions make contact with
process than glutamatergic spine synapses. Although, in the case of GABAergic boutons, that contact with GABAergic boutons promotes
glutamatergic synapses, dendrites grow small protrusions, such as spines the retraction of dendritic protrusions or, perhaps most likely, that
and filopodia, to form new synaptic contacts with nearby axons, such contact with glutamatergic boutons can prolong the lifetime of den-
protrusions do not seem to mediate the formation of GABAergic dritic protrusions. It has been shown that dendritic protrusions can
synapses. In contrast, new GABAergic synapses appear to be formed detect and grow toward glutamate35,36 and that dendritic protrusions
exclusively at locations where GABAergic axons and postsynaptic often make contacts with pre-existing glutamatergic boutons that are
dendrite are already in close proximity. Although the above caveat already part of a synapse7,8. Stabilization of dendritic protrusions has
about preparation and molecular/genetic cellular identity holds, our been shown to be correlated with (appearance or) growth of the
data make a strong case that GABAergic and glutamatergic synapse postsynaptic density, and this process depends on the activation of
formation occur according to very different schemes. glutamatergic receptors9. This suggests that contact with glutamatergic
Our immunofluorescence labeling (Figs. 1 and 6) showed that the boutons indeed stabilizes dendritic protrusions. The observation that
great majority of stable GABAergic boutons probably represent actual some spines have GABAergic contacts seems to argue against GABA as a
synapses. However, from the two-photon imagery, it is impossible to retraction signal, although previous studies have shown that spines with
definitively tell whether a GABAergic bouton synapses onto the GABAergic synapses usually also have a glutamatergic synapse3,26,37,38,
labeled dendrite or onto another nonlabeled nearby dendrite. Indeed, potentially stabilizing the spine and ‘protecting’ it against negative
B15–20% of the light microscopy–identified contacts were close to GABAergic effects. In any case, our findings clearly indicate that
gephyrin-labeled structures that were not on the labeled dendrite outgrowing dendritic protrusions can distinguish between potential
but were instead elsewhere adjacent to the bouton. This drawback, presynaptic partners, even before synapses are formed10,11. It should
inherent to conventional light-microscopy imaging, does not conflict be kept in mind that the mechanism for the formation of new
with or devaluate our main observation that new GABAergic GABAergic synapses could change with changing circumstances.
boutons are formed at pre-existing axon-dendrite crossings without For instance, during early development, when GABA is depolarizing
mediating protrusions. and can induce calcium influx, GABA might stabilize dendritic protru-
Our post hoc immunostaining of newly formed GABAergic boutons sions, possibly leading to the formation of GABAergic synapses on
showed that boutons can acquire pre- and postsynaptic markers in a dendritic protrusions.
period of several hours after their first appearance, suggesting that new Our main finding is that new GABAergic synapses appear to be
functional GABAergic synapses can be formed on a similar time scale as exclusively formed by the appearance of new boutons at pre-existing
has been previously shown for glutamatergic synapses23,25,29,30. How- axon-dendrite crossings. Although this is in marked contrast with the
ever, for both types of synapses, the formation of morphologically fully formation of glutamatergic synapses, in which the outgrowth of
mature synapses (with membrane specializations as observed at the dendritic protrusions often has a major role, it is not unique, as
electron-microscopy level) may take longer, perhaps even days7,8,23,34. glutamatergic axons can also form new boutons at pre-existing spines39.

1050 VOLUME 11 [ NUMBER 9 [ SEPTEMBER 2008 NATURE NEUROSCIENCE


ARTICLES

A recent study showed that axons appear to have preferred locations for 1 mM pyruvate and 1 mM Trolox. The temperature was maintained at 35 1C.
forming new boutons, even in the absence of postsynaptic structure40. CA1 pyramidal neurons were filled through a patch pipette and 250 mM Alexa
At present, it is not clear how the locations for new boutons are deter- Fluor 594 was added to the pipette solution.
mined. One possibility is that these locations are determined by the For experiments with labeled glutamatergic axons, slice cultures of wild-type
C57 BL/6 mice were used. Glutamatergic axons were labeled via extracellular
presence of cell adhesion or other signaling molecules. Indeed, recent
bolus loading from a pipette in the CA3 pyramidal layer, as will be described
studies have shown that the formation of GABAergic and glutamatergic elsewhere (N.B., C.J.W., Fonseca, R., T.B. and Nägerl, U.V., unpublished data)29.
synapses is regulated by different synaptic adhesion molecules41–43.
Differential expression of such molecules on dendritic shafts and Imaging. Time-lapse images were acquired using a custom-made two-photon
protrusions could provide an explanation for the different mechanisms laser-scanning microscope based on an Olympus IX70 microscope with a 40,
1.2-NA water-immersion objective (Olympus). GFP and Alexa Fluor 594 were
© 2008 Nature Publishing Group http://www.nature.com/natureneuroscience

underlying the formation of glutamatergic and GABAergic synapses.


Our findings imply that GABAergic axons in a mature network can simultaneously excited using a laser beam tuned to 855 nm (5W Mira-Verdi
laser system, Coherent). Laser power at the objective was 4–5 mW. Fluorescence
make new synapses only with postsynaptic partners that are in their
was detected by external photomultipliers (Hamamatsu).
immediate neighborhood, which is in marked contrast to the way The imaged regions varied between 100 and 140 mm (1,024  1,024 pixels)
glutamatergic synapses are made. Our findings do not address whether and stacks consisted of 60–99 z layers (step size Dz ¼ 0.5 mm), depending on
GABAergic and glutamatergic synapses differ in their capacity to the overlap between GFP axons and labeled dendrites. Images were taken every
undergo plasticity, but they suggest that plasticity in GABAergic 30 min, for a total of 3–6 h. Small misalignments of images between time
connections is more restricted than that in glutamatergic connections. points as a result of drift were compensated for during the analysis.
The degree of this restriction depends on the number of available axon-
Data analysis. Image stacks were visually inspected in ImageJ (US National
dendrite crossings. An adaptable GABAergic system requires that
Institutes of Health) to determine all of the locations at which a GFP-labeled
GABAergic axons cross and touch the dendrites of a sufficiently large axon or bouton was in close proximity to labeled dendritic structures. These
number of potential postsynaptic partners. We found that, in our slice locations were subsequently examined in detail at all time points and z sections
cultures, B60% of axon-dendrite crossings do not have a GABAergic to detect possible contacts using software written in Matlab (Mathworks). To
bouton and therefore leave ample opportunity for generating new reduce noise, images were filtered with a 2  2-pixel Wiener filter. Analysis was
GABAergic connections. Obviously, plasticity can also be achieved by always carried out on individual image sections. Volume renderings were made
changing the strength of pre-existing synapses, but so far as synaptic in Imaris 5.0.1 (Bitplane) and were used for illustrational purposes only.
strength is controlled by synaptogenesis, the different rules for plasticity The overlap between the red and the green channel was determined after
in the mature network may require different developmental strategies thresholding the channels independently. Thresholds were empirically defined
by a semi-automatic two-step procedure. In the first step, the background was
for GABAergic and glutamatergic axons44,45. In this context, it should
distinguished from neuronal structures such as dendrites and axons (threshold
be noted that anatomical studies have shown that many GABAergic
¼ mean + 3 s.d. of intensity values of a local 200  200-pixel area). In the
axons are highly complex with often tortuous paths, whereas glutama- second step, boutons were distinguished from axonal shafts (threshold ¼ mean
tergic axons tend to follow more linear trajectories45–47. A theoretical + 1.5 s.d. of axon pixel intensities). In this way, thresholds were objective and
analysis of the trajectories of axons revealed that GABAergic axons have automatically corrected for bleaching (B5% in the green and 15–20% in the
substantially larger overlap with the dendritic trees of their potential red channel over the entire imaging period). Nevertheless, we also verified that
target neurons than expected from chance, whereas this is not the case changing these thresholds only marginally changed the numbers but did not
for glutamatergic axons44. These findings suggest that glutamatergic affect our general conclusions.
axons grow relatively straight, as nearby postsynaptic partners can later For simplicity, we refer to all axonal swellings or varicosities as boutons,
grow spines to form synaptic contacts. Conversely, GABAergic axons although we are aware that some of them might not contain presynaptic
specializations. Conversely, some small presynaptic structures might go unno-
may cross and touch dendrites of many postsynaptic neurons to
ticed by this procedure. Furthermore, to avoid ambiguities, all dendritic
enhance their future potential for synapse formation.
structures that formed during our observation are simply denoted as protru-
Taken together, our findings imply that fundamentally different sions, irrespective of whether they were filopodia like or spine like. We use the
mechanisms underlie the generation of GABAergic and glutamatergic term ‘spine’ for stable dendritic structures that were present before and during
synapses, at least as far as the involvement of dendritic and axonal the entire imaging period.
protrusions are concerned. Glutamatergic synapses use short connecting Contacts between a GABAergic bouton and a labeled dendrite were
processes such as filopodia and spines to enable new synaptic connec- considered to be physical contacts only if the red and the green channel had
tions, whereas GABAergic synapse rely on pre-existing axon-dendrite overlapping pixels in at least two z sections and if the overlap covered at least
crossing. This puts substantial structural constraints on the generation 10% of the bouton pixels (mean ± s.d. bouton volume ¼ 126 ± 86 pixels, n ¼
and plasticity of GABAergic and glutamatergic synapses, which will be 221 boutons). For contact with spines, the value of 10% of the smaller structure
(that is, bouton or spine) was used. Because of their small size and low
important to keep in mind when trying to understand development and
fluorescence levels, outgrowing dendritic or axonal protrusions were considered
plasticity of the intricate neural networks of the brain.
to be making contact when they showed any overlap (Z1 pixel) with a labeled
bouton or dendrite, respectively. The minimal volume for new or transient
METHODS boutons was set at 15 pixels.
Cultures. Hippocampal slices (300 mm thick) were prepared from postnatal day The lifetime of transient contacts and protrusions were determined by
2–5 GAD65-GFP mice17 and maintained using the roller tube technique48. In counting each time point at which the contact or protrusion had been present
these mice, 30–50% of hippocampal GABAergic interneurons express GFP, at 30 min. In principle, for every time point, the actual lifetime could have been
with a steady expression level from early embryonic age to adulthood17. Slices between 1 and 59 min. One should also realize that lifetimes beyond the
were kept in culture for at least 1 week before the experiments (range, 7–20 d imaging period (3–6 h) are artificially shortened by the end of the imaging
in vitro; mean ± s.d., 12.2 ± 3.8 d in vitro). At this developmental stage, the period and therefore the distributions (Fig. 5a,b) are inevitably biased toward
hippocampal network is mostly mature, but synapse formation still takes place. shorter lifetimes.
For the experiments, cultures were transferred into a recording chamber,
where they were continuously perfused with carbogenated (95% O2, 5% CO2) Immunofluorescence staining. For post hoc immunofluorescence analysis, the
artificial cerebrospinal fluid containing 126 mM NaCl, 3 mM KCl, 2.5 mM GFP signal in GABAergic axons was amplified by immunofluorescence staining
CaCl2, 1.3 mM MgCl2, 1.25 mM NaH2PO4, 26 mM NaHCO3, 20 mM glucose, (chicken antibody to GFP, 1:1,000, Chemicon). GABAergic synapses were

NATURE NEUROSCIENCE VOLUME 11 [ NUMBER 9 [ SEPTEMBER 2008 1051


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